Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1199 181 8e-41 seq102 181 8e-41 seq641 145 6e-30 seq90 136 3e-27 seq869 87.8 1e-12 >seq1199 Length=11192 Score = 181 bits (200), Expect = 8e-41 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| ||||| | || || ||||| ||||| |||||||| ||||||||||| Sbjct 949 TGCCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAG 1008 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | |||||||||||||| |||||| | || | |||||||||||| || Sbjct 1009 AAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTG 1068 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| |||||||| || ||||||| || ||| |||| ||| |||| | ||| | Sbjct 1069 GAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGA 1128 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || ||||||||||| || |||||||| ||||| ||||||||| Sbjct 1129 CTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATA 1178 Score = 181 bits (200), Expect = 8e-41 Identities = 185/241 (77%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||||||||||||||| || ||||| |||||||| || |||||||| | Sbjct 1179 CCACCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 1238 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | |||||||||||||| |||||| | || | |||||||||||| ||| Sbjct 1239 AAAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGG 1298 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || ||||||| || ||| |||| ||| |||| | ||| || Sbjct 1299 ATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAACT 1358 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA---TTTGAAAAT 15373 || || || ||||||||||| || | ||||| ||||||||||||||| ||| ||||| Sbjct 1359 TCCAATGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATAATGTTTTAAAAT 1418 Query 15374 A 15374 | Sbjct 1419 A 1419 Score = 161 bits (178), Expect = 7e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| || ||||| |||||||| || |||||||| | Sbjct 723 CCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 782 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | |||||||||||||| || || | || || | |||||| || ||| Sbjct 783 AAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGATCTGGTGGG 842 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || |||||| || ||| |||| ||| |||| | ||| || Sbjct 843 ATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATGTTATCTGAACCTTCGACT 902 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||||||||| || |||||||||||||| |||||||| Sbjct 903 TCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 >seq102 Length=41085 Score = 181 bits (200), Expect = 8e-41 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||||||||||||| ||||| ||||| |||||||| || |||||||| Sbjct 387 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAA 328 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||||||||| |||||| | || || | |||||| || |||| Sbjct 327 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 268 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| ||| || ||| |||| ||| |||| ||| ||| || Sbjct 267 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACC 208 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| || || || || || |||||||| ||||| ||||||||| Sbjct 207 TCTAAGGTGATAGTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCATA 160 Score = 181 bits (200), Expect = 8e-41 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | ||| || ||||| ||||| |||||||| ||||||||||| Sbjct 843 CCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 784 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||||||||| |||||| | || | ||||||||| || |||| Sbjct 783 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGA 724 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| ||| || ||| |||| ||| |||| ||| ||| || Sbjct 723 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACC 664 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| || || || || ||||| ||||| ||||||||| Sbjct 663 TCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCATA 616 Score = 168 bits (186), Expect = 5e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| | || || ||||| ||||| |||||||| ||||||||||| Sbjct 615 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 556 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | |||||||||||||| |||||| | || || | |||||| || |||| Sbjct 555 AGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 496 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| ||| ||| ||| |||| || |||| | ||| || Sbjct 495 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACT 436 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||||||||| || |||||||| ||||| ||||||||| Sbjct 435 TCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATA 388 Score = 100 bits (110), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| | ||||||||| || ||||| |||||||| ||||||||||| Sbjct 159 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 100 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCG-TATATCAAACGTTGTTGGTCGTTTGG 15255 ||| | | | ||||||||||| || |||||| | || || | |||||| || ||| Sbjct 99 AGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTGATCTGGTGG 40 Query 15256 AATTCCTTCTTTGTC 15270 ||| |||||||| || Sbjct 39 AATACCTTCTTTATC 25 >seq641 Length=13309 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| | || ||||| || || || |||||||| || || ||||| Sbjct 12972 CCACCTCTTAATCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAG 13031 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| |||||||| || ||| | || | ||||||||| || ||| Sbjct 13032 AGAGTACGGCCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGA 13091 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || ||||| ||||||| |||| ||| | || ||| ||| || Sbjct 13092 ATACCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTCACTACCTTCAACT 13151 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||||||||||| || || ||||| ||||||||||||||| Sbjct 13152 TCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCATA 13199 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| | || || ||||| ||||| || ||||| ||||||||||| Sbjct 12744 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 12803 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| |||||||| || ||| | ||||| | |||||| || |||| Sbjct 12804 AGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGA 12863 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || ||| || | || ||| |||| || |||| |||| || Sbjct 12864 ATACCTTCTTTATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAACT 12923 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || || ||||| || | ||||| ||||| ||||||||| Sbjct 12924 TCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCATA 12971 Score = 118 bits (130), Expect = 8e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 15175 TTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATAT 15234 |||||| ||||||||||| ||| | | | ||||| |||||||| || ||| | || Sbjct 12554 TTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAAT 12613 Query 15235 CAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTC 15294 | ||||||||| || |||||| |||||||| || || ||| || ||| | || Sbjct 12614 GAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTGGCTTTAACATTCTC 12673 Query 15295 TATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15354 ||| |||| ||| ||| || || | |||||||||||||| || || ||||| ||||| Sbjct 12674 AATGTTATCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAA 12733 Query 15355 AATTTGCATA 15364 ||||||||| Sbjct 12734 GATTTGCATA 12743 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| | |||||||| || || || |||||||| ||||||||||| Sbjct 13200 CCACCTCTTAATCTGAGTACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAATCAGAA 13259 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTG 15246 ||| | | | ||||| |||||||| || ||| | || | ||||||||| Sbjct 13260 AGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTG 13309 >seq90 Length=44396 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||||||||||||| || ||||| || || ||||| ||||| |||||| | Sbjct 14432 CCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGAT 14373 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | |||||||||||||| || || | || | ||||||||| || ||| Sbjct 14372 AAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 14313 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| ||| || || |||| ||| | || | ||| || Sbjct 14312 ATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACT 14253 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||||||||| || | ||||| || || |||||||| || Sbjct 14252 TCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCATCTT 14203 >seq869 Length=10793 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| || ||||||||||||||||||| | || |||||| |||||||| | || Sbjct 10128 CCACCACTTAATCTTAAAACTAAATGAACAGATGATTCTTTTCCAATGTTGTAGT--CTG 10071 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||||| | | |||| ||||| ||| ||| | || | ||| |||||| || Sbjct 10070 ATAATTCATGGCCATCTTTTAATTTTTTACCACCATAAACTAAATTTTGTTGACTTGATG 10011 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCT 15313 |||| || ||||| || |||| | |||||| | | |||| || |||| ||| | Sbjct 10010 GAATGCCCTCTTTTTCGCAAA-TCAACTCTTTAAGATTTTCAATTTTATCACTACCATTA 9952 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || | || ||| || |||| | | |||| |||||||||||||| || Sbjct 9951 ACTTCAATGGCAATTTTTCTACCATTTATAGTTAAAACAAAAATTTGCATGTT 9899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362171378287452