Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1199 181 2e-40 seq641 176 1e-38 seq102 114 3e-20 seq23 84.2 5e-11 >seq1199 Length=11192 Score = 181 bits (200), Expect = 2e-40 Identities = 184/239 (77%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 104323 TTTATTTA--TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATA 104380 ||| |||| |||| ||||||| || | |||| ||| | ||| |||||||| || ||| Sbjct 711 TTTTTTTAATTTCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATA 770 Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || || || |||| ||| | ||| ||||||| |||||| || |||||||||| || ||| Sbjct 771 TTGTAATCTGATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGT 830 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 ||||| || || || ||||||||||| || || || ||||| |||||||| | | |||| Sbjct 831 TGATCTGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATGTTATCT 890 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| || |||| ||| || || |||||||| || ||||||||||| || ||||| Sbjct 891 GAACCTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 Score = 167 bits (184), Expect = 5e-36 Identities = 196/264 (74%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| ||| | ||| |||||||| || ||||| || || Sbjct 1176 ATACCACCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCT 1235 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | ||| ||||||| |||||| ||||| ||||| || | ||||| || || Sbjct 1236 GATAAAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGT 1295 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| ||||| || ||||| |||||||| | | |||| | ||| Sbjct 1296 GGGATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCA 1355 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG-TGTAC 104568 || || | ||| || || |||||||| | |||||| ||||| || ||||| || | || Sbjct 1356 ACTTCCAATGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATAATGTTTTAA 1415 Query 104569 AGTATTTATTAGAGTAATAATTAT 104592 | |||| || | ||||||| || Sbjct 1416 AATATTGATAGAAATAATAATAAT 1439 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || || || | || | || |||||||| || || || || ||| Sbjct 948 ATGCCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCA 1007 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||||| |||||| ||||| ||||| || | ||||| || || Sbjct 1008 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGT 1067 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| ||||| || ||||| |||||||| | | |||| | ||| Sbjct 1068 GGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCG 1127 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||| || || |||||||| || ||||| ||||| || ||||| Sbjct 1128 ACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 >seq641 Length=13309 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || ||||| | ||| | || |||||||| || |||||||| ||| Sbjct 12969 ATACCACCTCTTAATCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCA 13028 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | |||||| || || ||||| || | |||||||| ||| Sbjct 13029 GAGAGAGTACGGCCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGA 13088 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || || || || ||||||||||| | | | || ||| ||| Sbjct 13089 GGAATACCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTCACTACCTTCA 13148 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| || |||||||| || ||||| ||||| || ||||| Sbjct 13149 ACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Score = 156 bits (172), Expect = 1e-32 Identities = 175/233 (75%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || || || | || | || ||||| || ||||| || || ||| Sbjct 12741 ATACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCA 12800 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| | |||||| || || ||||| | || |||||||| || Sbjct 12801 GAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGT 12860 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGT 104506 || || ||||||||||| |||||||||| ||| |||||||| | |||| ||| | Sbjct 12861 GGAATACCTTCTTTATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCT---T 12917 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || |||||||||||||| | |||||| ||||| || ||||| Sbjct 12918 TCAACTTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 152 bits (168), Expect = 1e-31 Identities = 147/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 104371 TTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAAT 104430 ||| ||||| || || ||||| ||||| | ||| ||||| | |||||| || || ||||| Sbjct 12554 TTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAAT 12613 Query 104431 TAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490 || | |||||||| || || || ||||||||||| || ||||| ||||| ||||| || Sbjct 12614 GAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTGGCTTTAACATTCTC 12673 Query 104491 TACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | | |||| ||| ||| || || |||||||| || |||||||| || ||||| ||||| Sbjct 12674 AATGTTATCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAA 12733 Query 104551 TATCTGCAT 104559 || ||||| Sbjct 12734 GATTTGCAT 12742 >seq102 Length=41085 Score = 114 bits (126), Expect = 3e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || || |||| ||| | || |||||||| || || || || ||| Sbjct 162 ATACCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 103 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGC-AAAAATTAGCCTCTGTTGATCAGG 104448 || ||||| | || ||||||| ||| || ||||| |||||||| || |||||||| || Sbjct 102 GAGAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTGATCTGG 43 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTT-GCTTTTACATTTT 104489 || || ||||||||||| || || ||| || || ||||||| Sbjct 42 TGGAATACCTTCTTTATCTTGGATTTTTGGCCTTGACATTTT 1 >seq23 Length=58329 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| |||||||||| ||||| ||||||||||| || || ||||||| ||||| Sbjct 22148 TACTAAATGTAATGTACTCTCTTTTTGAATATTATAATCTTTTAATGTTCTACTATCTTC 22089 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 || |||| | || ||||| | || || |||||||| ||||||||||| Sbjct 22088 TAATTGTCTACCTGCAAATAGTAATCTTTGTTGATCTAATGGTATTCCTTC 22038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151372258938576