Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq1 259 3e-64 >seq1 Length=107950 Score = 259 bits (286), Expect = 3e-64 Identities = 307/416 (74%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 70246 TCAAAAAGAAATTCCGCAAAGCGGCTGGCGGAGTCAAGAAGATGGAAAACCGTGATGCGG 70305 ||||||||||| || ||||||| | | ||| || || ||||| ||||| ||||||| Sbjct 54409 TCAAAAAGAAAACTCGTAAAGCGGTTATTGAAGTTAAAAAAATGGAGAACCGCGATGCGG 54350 Query 70306 TGGAAGCGACTGTCTGGGGCGCATATTCCATTGCATACTCTGACGGCACCTGCGATGCGA 70365 | ||||| ||||||||||||||||| || || || | ||||||| ||| ||||| | Sbjct 54349 TCGAAGCTACTGTCTGGGGCGCATACATGATCGCTTATGCAGACGGCAACTGTGATGCAA 54290 Query 70366 AAGAAATTGCAGTATTGGAAAAAACCATTGCAGCACTTCCTGCCTTTGCGCCGTTCTCCG 70425 ||||||| || | |||| || ||||| | ||| | || ||||| | |||||| | | Sbjct 54289 AAGAAATCGCTATTCTGGAGAAGACCATCTCCGCATTGCCAGCCTTCTCACCGTTCGCGG 54230 Query 70426 GTGAAATTGCCCAGATGAGCGCCAATATTCGCGCTCAATATGAAGCCTCGCCGCGCCGAG 70485 |||| || || ||||||||| ||||||||| |||| |||||||| || || || | Sbjct 54229 GTGAGATCGCGCAGATGAGCAGCAATATTCGTGCTCGCTATGAAGCTTCTCCTCGTTCCG 54170 Query 70486 CGAATGCCCAGGCTTTACGTGAACTGGCTGACGTGTCTGGAACTAATGATGCGGTAGATG 70545 | || || |||||| | || || |||||||| || | || ||| || || || |||| Sbjct 54169 CCAACGCACAGGCTCTTCGGGAGCTGGCTGATGTCGCCGGCACTCCAGAAGCCGTTGATG 54110 Query 70546 TTCTGTGCCTATGCATTGATATTGCTGACCAGGATGGCATTGGGGCAGAAGAGCAGGAGC 70605 | |||| || ||| | |||||||| || ||||||||||| || | |||||| ||| Sbjct 54109 TGTTGTGTCTCTGCCTGGATATTGCCGATCAGGATGGCATCGGCGAAGAAGAAGAGGTTG 54050 Query 70606 AATTGAAGAAAATTGCCCAGGCTCTTCAATTACCACTGGAACAGTATATCTGATGG 70661 ||||||||||||| ||||| || || ||| | ||||| ||| |||| |||| Sbjct 54049 TGCTGAAGAAAATTGCTCAGGCGCTGCAGTTATCTCTGGATGCGTACATCTAATGG 53994 Score = 105 bits (116), Expect = 4e-18 Identities = 63/66 (95%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 69576 CCCTTACCGTTGTGATGAAGTGCAGCTCTTTGAAGCAACCAGAAGATAAGCATCTGGCTT 69635 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | Sbjct 96704 CCCTTACCGTTGTGATGAATTGCAGCTCGTTGAAGCAACCAGAAGATAAGCATCTGGCGT 96645 Query 69636 CACAAC 69641 |||||| Sbjct 96644 CACAAC 96639 Score = 105 bits (116), Expect = 4e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 69348 GATGGTGTAGCTCAGCGGTTAGAGCGGTTGACTGTTAATCAACGGGTCGATGGTTCAAAT 69407 ||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||| ||| Sbjct 96856 GATGGTGTAGCTCAGTGGT-AGAGCGGTTGACTGTTAATCAACTGGTCGGTGGTTCGAAT 96798 Query 69408 CCATCCACCATCGCC 69422 ||| ||||||||||| Sbjct 96797 CCACCCACCATCGCC 96783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303228651256812