Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq1 237 5e-58 >seq1 Length=107950 Score = 237 bits (262), Expect = 5e-58 Identities = 546/809 (67%), Gaps = 14/809 (2%) Strand=Plus/Minus Query 22148 ATAACGAAGCTGGCAAATGACCTGGCGACCACCAATGGTAACGTGTCGAAAAAAGCTGAA 22207 || || || ||| ||||||||||||| || |||||| ||||| ||||||||||| Sbjct 6602 ATCACCAAACTGACAAATGACCTGGCAACGACCAATAACAACGTCAGTAAAAAAGCTGAT 6543 Query 22208 CAATCAGCGCTG-AACAGTCT-GACGGGGCGGGTCGAGAAGACGGAGAGCGGTCTCAGTG 22265 || |||||| || || | | | ||||| ||||| | || || | ||| || | Sbjct 6542 CAG--AGCGCTTTAAGCGTGTTGTCCGGGCGCGTCGATCAAACAGA-ATCGGGCTTATCC 6486 Query 22266 -CAGCCAACAGCAGTATAACGTCGCTGAATGCAGCCGTTCGGGCCGGAAACGCCTCCAGC 22324 | || || |||||||| || |||| ||| || | || || || || || || | || Sbjct 6485 TCTGCGAATAGCAGTATCACTGCGCTTAATTCATCTGTACGCGCAGGGAATGCGACAAGT 6426 Query 22325 GGAGACTTAATCCCTAATCCGACGTTTGATCCGGCATTTGGTCAGCTGGGGCTGGCCGTT 22384 || || || || || ||||| ||||| || | ||| ||||| |||| | | || Sbjct 6425 GGCGATTTGATTAGCAACCCGACATTTGACCCAGAGTTTAGTCAGATGGGCTTCACTGTG 6366 Query 22385 GTATCCACCACGTCGGATGGCGTGCCATCGGGTTGTCCGTTTGCAAATGCGGTGAAGC-T 22443 || |||| | |||| || ||||||||| | ||| || | || ||| | | || | Sbjct 6365 GTTTCCAGCTCGTCTGAGGGCGTGCCAGCCAATTGCCCATACGCTTATGTCGC-ACGCAT 6307 Query 22444 GACGGGGCGCGATCATCATCCTGACATGGCGGCTATTCCTGCCACTTTGGGAGATGTGTT 22503 ||| ||||| ||||| || | | || |||||||| || || ||||| ||||| | Sbjct 6306 TGCGGCTCGCGACCATCACCCAAATTTTGCTGCTATTCCGGCGACATTGGGGGATGTCTA 6247 Query 22504 TGAAATGTCAGCCCTGGTCTCCTGCGGTGCGGGTACGGCAGATTTTAATTTTTACCTTGG 22563 ||||||||| || || ||| | || ||| | || | || ||||| || | || || || Sbjct 6246 TGAAATGTCTGCTCTCGTCGCGTGTGGTACCGGCTCCGCTGATTTCAACCTGTATCTCGG 6187 Query 22564 TACAACGACATCCTCAAACGCGAATACAAACCAGGCGTTATTCA-CCGGCGGAAACACCA 22622 || | ||| ||| || | | | || | ||| ||||||||||| || Sbjct 6186 AACCGCAACAAGGCCAAGCG-GCAGCGTGGGCGCGCCTCTGTCATCCGGCGGAAACCGCA 6128 Query 22623 AAGCAACAGCGCAATGGAAGCGAGTCACCTGGCGATTCACGGTCAACCAGGAGATGGTCA 22682 | || | || |||| ||||||| ||||||||||||| | | |||| ||| ||| Sbjct 6127 AGGCGTCGGCCACATGGCAGCGAGTAACCTGGCGATTCAAAATTACTCAGGGGATTGTCG 6068 Query 22683 ACCGCGGGTATATCCGTCCGTTCCTGCAGATTAGCCAGAGTTCA--CCGTTTGGCACCGT 22740 | ||||| | ||||||| |||||||| |||| |||| | || || || |||||||| Sbjct 6067 ATCGCGGCTTCTTCCGTCCATTCCTGCAAATTAACCAG--TCCAGCCCATTCGGCACCGT 6010 Query 22741 CTGGTATGTGACAGACTGGCATTTGCGTAACATCACTGCTGCGGCCAGCGCTCAGGATGC 22800 |||||||||||| ||||||||| |||| ||| | || | | ||| | |||||| | Sbjct 6009 CTGGTATGTGACTGACTGGCATCTGCGGAACGTAACCGACTCCTCCAAAGTCCAGGATTC 5950 Query 22801 GGCAGATGCGACAGCAAAAGCCGTTGATTCTCTGACGACGACCGTCAACCAGCAGGGCAG 22860 || || || || ||||| |||||||| ||||| | || || || || ||||| Sbjct 5949 CCTCGACGCCACGGCGAAAGCGGTTGATTCGCTGACCTCTACGGTAAATCAACAGGGGGA 5890 Query 22861 CACGCTCACCAGTATCGGAAACAGGACTACGACGCTGGAAAACGGGCTGTCAACGACGAA 22920 | || | ||||| || | | ||||| | || || ||| || ||| || || Sbjct 5889 GAATATCTCAAGTATTGGTACACGCACTACCAATCTTGAGAACAATTTGAGAACAACAAA 5830 Query 22921 TGCTGACGTCAACAAAAAAGCGGACGCCA 22949 ||| |||| ||||||||||||||| Sbjct 5829 TGCAAACGTTGCACAAAAAGCGGACGCCA 5801 Score = 230 bits (254), Expect = 8e-56 Identities = 403/585 (69%), Gaps = 4/585 (1%) Strand=Plus/Minus Query 18776 TTTCGCCTCGATTTAACGGTGGATCAGTCTGATGATAATTTCATCATCATTGACTGGATT 18835 || ||| ||||||| || | |||| || || |||| | | | | |||||||| Sbjct 10556 TTCCGCTTCGATTTCACTTCAGGTCAGGATGCGGACAATTACCTGTTATTCGACTGGATC 10497 Query 18836 GCCGTAGGTCGACCGACGCCGGGAGCCAGCACTGCAGCATTGCGCGAAGAATCGACAGCC 18895 ||||| ||||||||||||||||| || ||| || || || | ||||| | || Sbjct 10496 GCCGTCGGTCGACCGACGCCGGGCGCAGGCATGGCCGCGTTACAGGAAGAGCAGCAGGCT 10437 Query 18896 CGTGCGAATGCCGATACGGCAGAAGCGAATAAGCGAGCCACGCTGGCCACGCAGATGCGG 18955 ||||||||||| ||||| || |||||| | ||| ||| |||| | || || || Sbjct 10436 CGTGCGAATGCGGATACCGCCGAAGCGCAGGCGCGCAGCACATTGGCTGCACAAATCCGC 10377 Query 18956 GGGACGAGTGAAAGCAATAATCTGGCAGACCTGCGCTCTGGCCTGTTGTTTCAGGAGATG 19015 || | ||||||| ||||||| ||| | ||||| || ||| | | |||||||| Sbjct 10376 GGTTCCTCTGAAAGCGGAAATCTGGACGACATTCGCTCCGGTCTGATCTATCAGGAGAAA 10317 Query 19016 AATGCGCGTATTACCGCCGATAAAGCGGAAGTGACCGCGAGAGAATCCCTTCAGACGCAG 19075 ||||| ||||| ||||||||| ||||||| || ||| | |||||||| ||||| | Sbjct 10316 AATGCTCGTATCACCGCCGATGCTGCGGAAGCGAGTGCGCGTGAATCCCTGCAGACTGAA 10257 Query 19076 TTCAATGACAATAAGGCCTCTGTCGCTGATGAACTGAGTTCCATCTCCACGGCACAAAGT 19135 ||||| || || |||||||| || || |||||| | | | ||||| | |||| | Sbjct 10256 TTCAACAGAAACAAAGCCTCTGTTGCAGAAGAACTGCATACGCTGTCCACTGAACAAGCT 10197 Query 19136 GCGCAGGCCAGTAAAATCAGCGGGCTGGAAACCAGCCTGGGGAAAAAGGCTGATGCCAGT 19195 | ||||| || || || | |||| || |||| ||||| || | ||||| ||||||||| Sbjct 10196 TCCCAGGCAAGCAAGATTACCGGGTTGCAAACAAGCCTTGGCCAGAAGGCCGATGCCAGT 10137 Query 19196 GCCGTACAGTCTCTGACACAAAAAGTGGAGCAGCAGGGCACCA--CATTAACCAGTCAGG 19253 || |||||| | | | || || || || ||||||||| || | | || || || Sbjct 10136 GCGGTACAGACAATTTCCCAGAAGGTCGAAGAGCAGGGCAACACCCTTAAATCACAAGGG 10077 Query 19254 GCAACACGCTGACCTCCCTGTCCAACCGTGTCGGAAAAACCGAATCAGGTGTGGCCGCAA 19313 || || || | | ||| || || || |||| || || ||||| | || | Sbjct 10076 GCGGCA--TTGTCTACGCTGGATAATCGCGTAGGAAGTGTTGAGTCTGGTGTATCTGCGA 10019 Query 19314 ACAGTAGTGCCATTACGGGCCTGCAGTCTACTGTCAGCCAGCAGG 19358 |||| | || || ||||| |||||||| || || | |||||||| Sbjct 10018 ACAGCAAGGCGATCACGGGTCTGCAGTCGACCGTAACCCAGCAGG 9974 Score = 140 bits (154), Expect = 1e-28 Identities = 267/391 (68%), Gaps = 3/391 (1%) Strand=Plus/Minus Query 24239 CGCGAGAACGCGGTGTACAGCATTGAGCTGTGGGCAATGATGCCTGCGGACCAGTCCCCG 24298 || || || ||||| | | ||||||| || ||||| |||||||| || || ||||| || Sbjct 3431 CGAGAAAATGCGGTATTCCGCATTGAACTCTGGGCGATGATGCCAGCAGATCAGTCGCCA 3372 Query 24299 TCGTCTGGGTGGCAGACGATAGTCGGTATTCAGGGGCAGAATGCGGCGGGGCAGAACAGC 24358 || || |||||| || || || ||| | ||| || || || || | |||| | Sbjct 3371 TCATCCGGGTGGTCAACAATCGTTGGTTTGCAGACCCAAAACGCTGCCAACAATAACAAC 3312 Query 24359 TGGCAGGGGGCTGTCACGATAACGGAAAGTGGTCTGGGCGAGCGCGGGAAGTGGGTGAAA 24418 |||| | ||| |||| || || ||| || |||| | | || | ||| |||| Sbjct 3311 TGGCCGTCGGCGATCACCATCACTGAAGGTTCGTTGGGGGGCAGAGGCACCTGGAAGAAA 3252 Query 24419 TTCAGTGGTAAGGCCCGGATGAACGGAACGGGCAGGACACGCGGGGTGGTGTGGATCTCC 24478 |||| || | | ||| | | || || ||| || ||||| || | ||||| || Sbjct 3251 TTCACCGGCACGCTCCGTGT-AGCG--ACTGGCCACACTCGCGGCGTATTCTGGATTTCT 3195 Query 24479 ACACGCGGGGCGACGGGCAGCGGAACGCCGGGTTACGACCTGTATATCGATGATGTTGTC 24538 || ||||| || || ||| ||| |||||||| || || ||||||||||||||||| || Sbjct 3194 ACCCGCGGAGCAACTGGCGCCGGTACGCCGGGGTATGATCTGTATATCGATGATGTAGTT 3135 Query 24539 ATCACGGATATCACCGACGCCCAGGATGCGCTGAATGTGGCTGATGCCAGTACCACAGCG 24598 |||| |||||||| ||||| | || || | | || |||| |||| | | | || Sbjct 3134 GTCACCGATATCACGGACGCAAAAGAGGCACAGGATTCGGCTAATGCGAACGCATCCGCT 3075 Query 24599 GTCAACAGCCTCACCACGCGGGTAACAAATG 24629 ||| |||||| ||| | || || || |||| Sbjct 3074 CTCACCAGCCTTACCTCACGTGTTACCAATG 3044 Score = 98.7 bits (108), Expect = 3e-16 Identities = 393/609 (65%), Gaps = 26/609 (4%) Strand=Plus/Minus Query 21356 ATCCCCGGCAACCTGATCACTAATGCCTCATTTGAAAGGGGAACTGACGGATTCAGCGGC 21415 |||||||| |||||||| || | || ||||| | || || || || | | ||| Sbjct 4313 ATCCCCGGGAACCTGATTGTAAACCCGTCTTTTGAGCGTGGTACGGAGGGCTATACAGGC 4254 Query 21416 TGGAGTGACCGGGCTT----CAGTCGTGACGTTACAGGCTCCGTACAAC--GGCACCCGT 21469 ||||| |||| || | || || ||| | |||| ||| ||| | |||||| Sbjct 4253 TGGAG----CGGGATTGCCACGGTGGTAACGCTGCAGGTTCC--ACATCTTGGCACCAAA 4200 Query 21470 GCCGCCAGACTGACCGCAGGAGGGGCGGTCGGTATCGGACAGGATGTTGATTTTGTT--- 21526 ||||||| |||| | || || || | | || | || ||| | ||| | || Sbjct 4199 GCCGCCAAACTGGCGGCGGGTGGTTCTGCAGGCGTGGGCCAGAA----GATCTCCTTCAA 4144 Query 21527 AAAGGC-CGCACGTATCAGATTGGCGTCCGGGCAAAACAGGATAGCGGCACCACGATTGC 21585 ||||| || |||| | ||||| || ||||||| ||||| ||||| ||| Sbjct 4143 AAAGGATCGTTCGTACAAAATTGGTATCTGGGCAAAGCAGGACCCTAATACCACCATTCA 4084 Query 21586 G--GACGGGAATAGAACAAAATTTCGTATCGCCGACAGCACCGGACTGATTGGCTCTTCA 21643 | ||| | | | |||||||| ||| | || || | | ||| || || | | Sbjct 4083 GTCGACTG--ACAACACAAAATTCCGTGTGGCAGAAGGTAACGGTCTAATCGCAAGTAAG 4026 Query 21644 GTTTATGGTCCGTTCACCAGCGACTGGCAGGAAGTTAAATTTACCTGGAAGGCACCGAAA 21703 | |||||| ||||| || ||||||||||||| | ||||||||||| | || Sbjct 4025 GCTTATGGCCCGTTTACTTCGAACTGGCAGGAAGTGTCCTGGACCTGGAAGGCGACAAAG 3966 Query 21704 GACGTCAGGGCGGCAGTACAATTCACAGCTTATCTCG-GCGCAGGCGCCATGTATTTTGA 21762 || ||| || | || || ||||| |||| ||| | ||||||||| ||||| ||||| Sbjct 3965 GATGTCGTTGCTGACGTTCAGTTCACTGCTT-TCTTGTCCGCAGGCGCGATGTACTTTGA 3907 Query 21763 TGACTTCTATGTTGTCGATATTACCGACCGCGTGGACATTGATGCCGCAGCTAACGCCAT 21822 ||| || ||||| |||||| | |||||| || || | | | || | | ||| || Sbjct 3906 TGATTTTTATGTCGTCGATGTGACCGACTCTGTTGAAACTCAGGCGAACTCGAGCGCGAT 3847 Query 21823 CGGCAGCCTCACCACGCGGGTGACGAGTGCGGAGGGCAGTATCACCAGCCAGGGTAGCAG 21882 | | ||| | || ||||| | | ||| ||||||||||||||| ||| Sbjct 3846 CACTAAACTCGATAGTCGTGTGACCAAAACAGAGAATGATATCACCAGCCAGGGCAGCCA 3787 Query 21883 CATCACGAAGCTGACGAATGACCTGGCGACCACCAATGGGAATGTGAATAAAAAGGCTGA 21942 | ||| | || | ||||||||| |||||||| || ||||| || || ||||| Sbjct 3786 AGTTACGCAACTTAAGAATGACCTTGCGACCACAAACACAAATGTTTCGAAGAAAGCTGA 3727 Query 21943 CGCAGCGGC 21951 || || || Sbjct 3726 TGCGGCTGC 3718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164998127953832