Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq34 156 5e-33 seq2 109 7e-19 >seq34 Length=55608 Score = 156 bits (172), Expect = 5e-33 Identities = 379/558 (68%), Gaps = 31/558 (6%) Strand=Plus/Minus Query 164380 AATGTTCA-ATTAAATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATT 164438 ||| |||| || | ||||| |||| ||| | ||||| | ||||| | ||| ||| || Sbjct 12348 AATTTTCACATCAGATTGGGATTTCGAAAATATGGGTATTGGTGGTTTGGATGCAGAGTT 12289 Query 164439 TTCTCTTATTTTCAGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaa 164498 | |||||||||||| ||||| |||| | |||| | ||| |||| || Sbjct 12288 TAGAGATATTTTCAGACGTGCATTCTCTTCACGTATTTTTCCACCAGCAATTGTAAAGAA 12229 Query 164499 aTTAGGCTGTAAA-CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAA 164557 ||| || ||| || ||| | ||||| || | ||| |||| || || ||| ||||||| Sbjct 12228 ATTGGG-TGTCAATCATGTTAAAGGTATGCTTTTATATGGTCCACCAGGTACTGGTAAAA 12170 Query 164558 CATTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTA 164614 | ||||| || || |||| | ||| | |||||| || || || || |||| Sbjct 12169 CTTTAATTGCCAGACAAATTGGT-AAGATGTTAAATGGTCGTGAACCA--AAGGTTGTCT 12113 Query 164615 ATGGTCC-TGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTG 164673 |||||| | ||| || || |||||||| ||| | || |||| ||| |||||| |||| Sbjct 12112 CTGGTCCATCGATT-TTAAATAAATATGTTGGTCAATCTGAAGAGAATATTAGAATGTTG 12054 Query 164674 TTTCAG-GAGGCTGAAGAAGAACAAAA-GAAAGCAGGTTTAGCTAGTAAA--TTACATGT 164729 || ||| || || || |||||||| | || ||| | | | | | ||||| | Sbjct 12053 TT-CAGAGATGCAGAGATTGAACAAAAAGCAA--AGGGCGA-CGATTCAGGTTTACACAT 11998 Query 164730 TATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT----GATAATATTATTC 164785 ||| |||| |||||| | ||||| |||| ||| |||||| || || | |||| Sbjct 11997 TATCATTTTCGATGAGTTGGATGCAATTTGTAAAGCTCGTGGTTCTAGACAAGGTGATTC 11938 Query 164786 A--------TGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTT 164837 | |||| ||||||| ||||| ||| | | | || |||||||| ||||| || Sbjct 11937 AGGTGTTGGTGATTCAGTGGTAAATCAATTGTTGGCAATGATCGATGGTGTCGAATCTTT 11878 Query 164838 AAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATT 164897 ||||| |||||| | | ||||||||||| || ||| | || ||||| |||||| | Sbjct 11877 GAATAACATTTTAGTCATTGGTATGACCAATAGAAAGGATATGATCGATGAAGCTTTACT 11818 Query 164898 ACGACCTGGTCGATTAGA 164915 || || ||||| || || Sbjct 11817 TCGTCCAGGTCGTTTGGA 11800 >seq2 Length=130934 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 19356 TACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGA 19415 |||| |||| ||||||||||| ||||| | || ||||||||| || ||||||||| Sbjct 30440 TACCACAAATTGGTGATAAGTTCTCTTCTCGTCATGGTCAAAAAGGTACTTGTGGTATGG 30381 Query 19416 TTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTA 19475 |||||||||||||||| | || || || || ||||| || || ||| | ||| | | Sbjct 30380 CTTATCGTCAAGAAGATTTACCATTCACAGTTGAAGGTATCGTTCCAGATATCATTGTAA 30321 Query 19476 ACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||||||||| ||||| ||| ||||| Sbjct 30320 ATCCACATGCTATTCCATCTCGTATGAC 30293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595858801435200