Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq102 136 4e-27 seq1199 122 8e-23 seq90 120 3e-22 seq641 111 1e-19 >seq102 Length=41085 Score = 136 bits (150), Expect = 4e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||| |||| | |||||||| | ||| ||||| ||||| | ||| | Sbjct 623 TTTGCATACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGT 564 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| | ||| | ||| || | ||||| || | || ||||||||||| |||| Sbjct 563 AATCAGAGAGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGAT 504 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||||||||||||||| | ||| || |||||||| | | | | |||| Sbjct 503 CTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAAC 444 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 443 CTTCAACTTCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 Score = 107 bits (118), Expect = 2e-18 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||| |||| || || ||||| | ||| ||||| ||||| | || | Sbjct 395 TTTGCATACCACCTCTTAATCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGT 336 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||| | || || || ||| || | ||||| || | || ||||||||||| || Sbjct 335 AATCAG--AAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTG 278 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| ||||||||||||||||| | ||| || || || || | | | ||| Sbjct 277 ATCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACT 218 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||||| || || ||||| |||||||| |||||||| ||||| Sbjct 217 ACCTTCGACCTCTAAGGTGATAGTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCAT 161 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||| |||| | || || || | ||| ||||| ||||| | ||| | Sbjct 167 TTTGCATACCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGT 108 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC-GCCAAAGATTAATCTTTGCTGA 94891 |||| | ||| | ||| || | || || || || ||| ||||||||||| ||| Sbjct 107 AATCAGAGAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTGA 48 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTT-GCCTTGAC 94932 ||||| |||||||||||||| || | |||||| |||||||| Sbjct 47 TCTGGTGGAATACCTTCTTTATCTTGGATTTTTGGCCTTGAC 6 >seq1199 Length=11192 Score = 122 bits (134), Expect = 8e-23 Identities = 172/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 ||||| ||||||||| |||| || || || || | || ||||| ||||| | || Sbjct 714 TTTTAATTTCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTG 773 Query 94832 TAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 ||||| | ||| || || ||| || | ||||| || |||| ||||||||||| | Sbjct 774 TAATC--TGATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTT 831 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 ||||||| || ||||||||||| || | ||||| || ||||| | | | || | Sbjct 832 GATCTGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATGTTATCTG 891 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || | ||||||||||| ||||| |||||||| |||||||| ||||||| Sbjct 892 AACCTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCATGC 951 >seq90 Length=44396 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| || || ||||| | || ||||||||||| | |||||||||| Sbjct 14432 CCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGG-- 14375 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| || || ||| || | ||||| ||| ||||||| | | ||| |||||||| | Sbjct 14374 ATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTG 14315 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | |||||||||||||| | ||| || || |||||| ||| |||| | || | Sbjct 14314 GGATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAA 14255 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||||||||| ||||| | ||||| || ||||| ||||| Sbjct 14254 CTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCAT 14206 >seq641 Length=13309 Score = 111 bits (122), Expect = 1e-19 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||| |||| | |||||||| | ||| ||||||||||| | ||| | Sbjct 12736 TTTGCATACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGT 12795 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||| | || || || ||| |||| ||||| || | || || |||||||| || Sbjct 12796 AATCAG--AAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTG 12853 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| |||||||||||||| || | ||| |||| || || | | | | || | Sbjct 12854 ATCTGGTGGAATACCTTCTTTATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGA 12913 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| ||||| || || ||||| | ||||| |||||||| ||||| Sbjct 12914 GCTTTCAACTTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||| |||| | ||||| || | ||| ||||| ||||| | |||| Sbjct 12964 TTTGCATACCACCTCTTAATCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTAT 13023 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| | ||| | ||| |||| ||||| || | || || | | ||| |||| Sbjct 13024 AATCAGAGAGAGTACGGCCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGAT 13083 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 ||||||||||||||||||| || | ||||| ||||| || ||| ||||| Sbjct 13084 CTGGAGGAATACCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTCACTAC 13143 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || |||||||| ||||| || ||||| ||||| || ||||| Sbjct 13144 CTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281270349920