Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq319 188 9e-43 >seq319 Length=25483 Score = 188 bits (208), Expect = 9e-43 Identities = 575/880 (65%), Gaps = 33/880 (4%) Strand=Plus/Minus Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 ||| || |||||||||||||| | |||| | | |||||| || || || || || Sbjct 7498 AGAGGCGAGATTACAAACGGCAATTTCATCTGGTGATGTATATTGAATGATTTCTGTACA 7439 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 ||||||||||| | || || |||||||| | |||||| || || || ||||| Sbjct 7438 AAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTGGCATTGCAAGCATC 7379 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 |||||| | |||||||| ||||||||||||| |||||||| ||||| || ||| | Sbjct 7378 CTTATACAAGATGAATGGTGTACCAGTTTCAACTTGAGATTCCATAATGGCGAACCAAAG 7319 Query 63077 GACTCGAGCCTTTATTATAGATTT--GTATCTC--------CTTTCTCTTTCGTATAGTG 63126 || |||| || |||||| | | ||| | ||| | |||| ||| | Sbjct 7318 ATCTTGAGCTTTAATTATACGTCTTGGTAGGCCTGGTGTGGCTTCATATTTCAAGTAGAG 7259 Query 63127 TATACAATC--GTTCGAACTC-GTCTCCCCAA-ACATTGTCCAATCCAGGACATTCATCC 63182 || || |||| | | || || ||| || | || | ||| | Sbjct 7258 AGCACGATGTTGTTCAGAGTGAGTTTCAGCAAGACCTGGTGC-----------TTCGTTT 7210 Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 ||||| | | | ||| || || | | | || || | |||||||| |||| | | Sbjct 7209 GGACAAAAGAGAGCCCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTGACC 7150 Query 63243 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 ||||| || ||| || || ||||| | ||| ||||| || || || || || || || Sbjct 7149 CAAAGGGC-ATAGAAAAGGTCTCTAGCTCTCATCTCCTCTTTACCAGTGTTTTTCTTGAG 7091 Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 ||| | ||| | | | ||| | ||||| || |||||||| | ||| | | || Sbjct 7090 ATCAATGAATTCAAAGACATCGGCGTGCCATGGCTCCAAGTAAACGGCAAAGGCACCTTT 7031 Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 | ||| || || ||||| | ||| | ||| || | ||| |||| | | |||||| Sbjct 7030 TCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTGG 6971 Query 63422 AATAATACCGTTTGATA-TACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT 63480 | | ||| || | || ||||||||||||| ||||| ||| | |||||||| | Sbjct 6970 TACCAAACCATT-GCTAGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAATTT 6912 Query 63481 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63540 || || | | ||| || || || || | || ||||| | ||||||| |||| || | Sbjct 6911 TATGAACGGCAATACCAATACCACCAGCACTCTTTGAGATGAGTGCGCATTGTTTCAAGG 6852 Query 63541 TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT- 63599 | || |||||||| || || ||| || |||| | || || ||||| ||||||| Sbjct 6851 TATCGTAGATACCATCGATTGAATCCTCTTTCATTTGAACTAAGAAACAAGAAGACATTT 6792 Query 63600 -TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 |||||| | || || ||||| |||||||| || | || || || || |||| || Sbjct 6791 GTGGTGATG--GTGTACCTGCATTGAATAAGGTTGGTGTGGCATGAGTGAATAATTTCTC 6734 Query 63659 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63718 || | | ||||| || | ||||| || || || || ||| || || | || Sbjct 6733 TGATAAACGTTTGTATGTGTTGATAGCAGAATCAATGTCTTCGCCATGGATACCAATTGA 6674 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63758 |||||||| |||||||| || || | ||| ||||| ||| Sbjct 6673 AACACGCATCAACATGTGTTGTGGACGTTCGACGATTTTG 6634 Score = 113 bits (124), Expect = 6e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 8433 GTGAATTGAATAGCATCAGCGGCTGGACGAGTACGGAGATAGTACATACCAGTCTTTAAA 8374 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || |||||| ||| ||||||||| || ||||||| | | | || ||||| || Sbjct 8373 CCTTTCCTCCATGAGTAGAAATGCATAGAGGTGAGTTTGGCAAAGGTTGGTTCTGCAATG 8314 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 | ||| | | ||| |||||||||||||| || || | || || ||||| | ||| Sbjct 8313 AAAACATTGAAACTTTGGCTTTGATCGATGAAAGCACCACGATCAGCGGCCATATCAATG 8254 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62209 | || |||| |||||||||||| ||||||||| Sbjct 8253 AGAGTTCTTTGACGAATTTCCCAAACAGTTTTATA 8219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622933401719520