Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq90 116 4e-21 seq641 114 1e-20 seq102 113 4e-20 seq1199 104 2e-17 >seq90 Length=44396 Score = 116 bits (128), Expect = 4e-21 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA-- 26822 ||| |||||| | || || ||||| |||||||| ||| | ||||| ||||| | ||| Sbjct 14202 CAAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGG 14261 Query 26823 -TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 ||| |||| |||||| | |||||| |||||| ||||||||||| || || || Sbjct 14262 TTCA---GACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACC 14318 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 ||||||||| | || || | | ||| |||||| | ||||||| | | | | ||| Sbjct 14319 AGATCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGA 14378 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||| ||||| || |||| | || | ||| | ||||| || Sbjct 14379 TTATAACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 14432 >seq641 Length=13309 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 |||||| | ||||| |||||||||||||| || | ||||| | ||| | ||| ||| Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCA 12911 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || | || || | || ||| ||||||| || |||||||| || || || ||| Sbjct 12910 ---GATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGAT 12854 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||||||| | |||| || || |||||| | ||||||| | | | | || || Sbjct 12853 CAACAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTAC 12794 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| ||||| ||| | || ||||||| ||| | ||||| || Sbjct 12793 AACATTCAAAAGGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 12744 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| ||| | || || ||||| | ||| | Sbjct 13198 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 13139 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| |||||| | || || || || || |||||||| || ||||| |||||| Sbjct 13138 GACAACATCGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 13079 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || || |||||| | ||||||| | | || || ||||| Sbjct 13078 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATAAT 13019 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| ||| ||||| |||| || ||| | ||||| || Sbjct 13018 ATCCAAAAAGAATCAACTCTCCATTTGGTACTCAGATTAAGAGGTGG 12972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| ||| | || || ||||| | ||| | Sbjct 12742 ATGCAAATCTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 12683 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | ||| ||| | || ||| ||||| || |||||||| || || || |||||| Sbjct 12682 GATAACATTGAGAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAA 12623 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || || |||||| | ||||||| | | | | || || ||| Sbjct 12622 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12563 Query 26949 ATTCAAAAA 26957 ||||||||| Sbjct 12562 ATTCAAAAA 12554 >seq102 Length=41085 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | |||||||| | |||||| | || | ||| | Sbjct 617 ATGCAAATCTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAGGTCGAAGGTAGT 676 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | ||| || | || ||| |||||| ||||||||||| || || || |||||| Sbjct 677 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 736 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || || |||||| | ||||||| | | | || || || ||| Sbjct 737 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 796 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || ||||||||||| ||| | || |||| || ||| | ||||| || || Sbjct 797 ATCCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGGTAA 846 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| ||| | |||||| | ||| | ||| Sbjct 389 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCT 448 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | || || | ||||| |||||| ||||||||||| || || || |||||| Sbjct 449 GATAATATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 508 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| || || |||||| | ||||||| | | || || || ||| Sbjct 509 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAAC 568 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| ||| | || ||||||| ||| | ||||| || Sbjct 569 ATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 615 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| || | |||||| | || | ||| | Sbjct 161 ATGCAAATCTTTGTTAAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGT 220 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | ||| || | || ||| |||||| ||||||||||| || || || |||||| Sbjct 221 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 280 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| || || |||||| | ||||||| | | | | || || || Sbjct 281 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 340 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| ||| | || | || | ||| | ||||| || Sbjct 341 ATCCAAAAAGAATCCACTCTTCACTTAGTTTTAAGATTAAGAGGTGG 387 >seq1199 Length=11192 Score = 104 bits (114), Expect = 2e-17 Identities = 168/238 (71%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 ||||| |||||| | ||||| |||||||||||||| ||| | ||||| | ||| | || Sbjct 1412 AAACATTATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACATTGGAAGTTGA 1353 Query 26822 A---TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACC 26878 | ||| || | ||| || | || ||| || ||| || |||||||| || || Sbjct 1352 AGGTTCA---GATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCC 1296 Query 26879 TCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG 26938 || || |||||| | ||||||| || || |||||| | ||||||| | | | | | | Sbjct 1295 ACCAGACCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTA-CTTTAT 1237 Query 26939 C-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | || || || || ||||||||||| || ||||| | || | ||| | ||||| || Sbjct 1236 CAGATTACAATATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGTGG 1179 Score = 100 bits (110), Expect = 3e-16 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 |||||| | ||||||||||| | ||||| ||| | ||||| | ||| | ||| ||| Sbjct 949 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 890 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || | ||| || | |||||| || || || |||||||| || || || ||| Sbjct 889 ---GATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGAT 833 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 ||||||||| | |||| | || |||||| | ||||||| | | | | | | | || || Sbjct 832 CAACAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTA-CTTTATCAGATTA 774 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || || ||||||||||| || ||||| | || | ||| | ||||||||||| Sbjct 773 CAATATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGAGGAAA 720 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 |||||| | ||||| ||||| | ||||| ||| | ||||| | ||| | ||| ||| Sbjct 1177 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 1118 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || | ||| || | || ||| || ||| || |||||||| || || || || Sbjct 1117 ---GATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGAC 1061 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | ||||||| || || |||||| | ||||||| | | | | || || Sbjct 1060 CAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTAC 1001 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||||||||| ||| | || ||||||| ||| | ||||| || Sbjct 1000 AACATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478651797627840