Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq319 224 1e-53 seq58 89.7 7e-13 >seq319 Length=25483 Score = 224 bits (248), Expect = 1e-53 Identities = 1154/1823 (63%), Gaps = 82/1823 (4%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 8433 GTGAATTGAATAGCATCAGCGGCTGGACGAGTACGGAGATAGTACATACCAGTCTTTAAA 8374 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || |||||| ||| ||||||||| || ||||||| | | | || ||||| || Sbjct 8373 CCTTTCCTCCATGAGTAGAAATGCATAGAGGTGAGTTTGGCAAAGGTTGGTTCTGCAATG 8314 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 | ||| | | ||| |||||||||||||| || || | || || ||||| | || Sbjct 8313 AAAACATTGAAACTTTGGCTTTGATCGATGAAAGCACCACGATCAGCGGCCATATCAATG 8254 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 | || |||| |||||||||||| ||||||||| | | || | || || || | | Sbjct 8253 AGAGTTCTTTGACGAATTTCCCAAACAGTTTTATAGAGTTCTTTCAATTCATCAGGGATG 8194 Query 62090 TT-----TGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62144 || ||| ||||||| |||| |||| || || ||||| ||||| Sbjct 8193 CCACCAATGGATT--GAATGGAACCACGTGCTGCAATGATTTGGTTCTTCATCTCTGGTG 8136 Query 62145 TCCATAATTTTCT-CTCGGTTAAAAC-TCTAAGGAGATGCGGATTAACTACTTGAAATTC 62202 |||| ||| | ||| | | | | |||| | | || ||| || | | ||||| Sbjct 8135 TCCA-AATACCCAACTCCATGAGATCCTCTA-GTAATTGTTTATTGACAATTGTGAATTC 8078 Query 62203 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 62262 |||| || || | ||| |||||||||| || || ||||| | | | ||||| || Sbjct 8077 ACCAGCTAAAACACGACGACTGTAAATATTTGAAGTGTATGGTTCAAAACATTCATTGTT 8018 Query 62263 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62322 || | |||||| ||||| || || ||||| ||||| | || | || | | Sbjct 8017 ACCAAGGATTTGACTTGTTGAAGCGGTTGGCATTGGTGCAATTAAGAGTGAGTTACGTAA 7958 Query 62323 ACCGTATGTTCTGA---TTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTAC 62379 ||| | | ||| | ||||| |||| | |||||||||| | ||| Sbjct 7957 ACCACCTTTATTGACGATCTTATCCTTTAATTCTGTCCAATTCCAACGTGAACTTGGTGT 7898 Query 62380 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62439 ||| ||| || ||||| ||| || || ||| | | || Sbjct 7897 AACATTCCACATATCATATTGAAGGATACCTTTAGAAGCTGGTGAGCCTTGGAAAGATTC 7838 Query 62440 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62499 || || || || | || | |||| | || ||| ||| || |||||||||| Sbjct 7837 ATAAGGACCATCACGAACGGCCAATTCATGAGAGGCTGTTAAAGCAGCGAAATAAATGGT 7778 Query 62500 TTCGAAGATCTTCTTATTTAGATCTTGC-GCTTCCAGGCTATCAAATGG-ATA---ATTT 62554 ||| ||| | ||||| || | || || | | ||||| || || ||| |||| Sbjct 7777 TTCAGCGATTTCAACATTTA-ATTTGGCAGCGGCAACACTATCGAAAGGCATACGCATTT 7719 Query 62555 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62614 | ||| | | |||||||| ||||||| ||||||||| || || | |||||| | Sbjct 7718 TAATGAAAACA----TCTGCTAAACCTTGAATACCAATACCAATTGGACGATGTCTAAGA 7663 Query 62615 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62674 || ||| ||| ||| || || |||||||| ||| ||| || || ||| |||||| Sbjct 7662 TTTGAGGTTTTAGCCTCGATAACTGGATAATAGTTACGATCAATGATAACATTAAGATTT 7603 Query 62675 -CTGACAATTACTTTGACCACATCCTTCAGT--TTGAG----AAAATCAAA--------- 62718 ||| | ||| |||| | || || |||| ||| ||||| Sbjct 7602 ACTGTGA-TTAATTTGGTGATTTCAAAGAGGAATTGATGGTCAAATTCAAACTCTTTTGG 7544 Query 62719 ------TCGCCCATCTATT--ACAAAC--ATGTTCAA--TGCAACAGATGCCAGATTACA 62766 | || || || || || || || | ||| | ||| || |||||||| Sbjct 7543 ATTGGTTGAACCTGCTTTTTGACGAATGAATTTTGGAAGTGCGATAGAGGCGAGATTACA 7484 Query 62767 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62826 |||||| | |||| | | |||||| || || || || ||||||||||||| | Sbjct 7483 AACGGCAATTTCATCTGGTGATGTATATTGAATGATTTCTGTACAAAGATTACTACTACT 7424 Query 62827 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 62886 ||||| |||||||| | |||||| || || || ||||||||||| | ||||| Sbjct 7423 AATGGTACCTAAATTCTTTTGATTGGATTTGGCATTGCAAGCATCCTTATACAAGATGAA 7364 Query 62887 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 62946 ||| ||||||||||||| |||||||| ||||| || ||| | || |||| || || Sbjct 7363 TGGTGTACCAGTTTCAACTTGAGATTCCATAATGGCGAACCAAAGATCTTGAGCTTTAAT 7304 Query 62947 TATAGATTT--GTATCTCTT-------TTC-TCTTTCGTATAGTGTATACAATC--GTTC 62994 |||| | | ||| || ||| | |||| ||| | || || |||| Sbjct 7303 TATACGTCTTGGTAGGCCTGGTGTGGCTTCATATTTCAAGTAGAGAGCACGATGTTGTTC 7244 Query 62995 GAACTC-GTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACC 63053 | | || || ||| | || || ||| | ||||| | | | || Sbjct 7243 AGAGTGAGTTTCAGCAA----------GACCTGGTGCTTCGTTTGGACAAAAGAGAGCCC 7194 Query 63054 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AAT 63112 | || || | | | || || | |||||||| |||| | |||||| || ||| || Sbjct 7193 AATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTGACCCAAAGGGC-ATAGAAA 7135 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 || ||||| | ||| ||||| || || || || || || ||||| | ||| | | Sbjct 7134 AGGTCTCTAGCTCTCATCTCCTCTTTACCAGTGTTTTTCTTGAGATCAATGAATTCAAAG 7075 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | ||| | ||||| || |||||||| | ||| | | || | ||| || || Sbjct 7074 ACATCGGCGTGCCATGGCTCCAAGTAAACGGCAAAGGCACCTTTTCTCTTGCCACCACCT 7015 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 ||||| | ||| | ||| || | ||| |||| | | |||||| | | ||||||| Sbjct 7014 TGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTGGTACCAAACCATTGCTA 6955 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 ||||||||||| || ||||| ||| | |||||||| ||| || | | ||| Sbjct 6954 GTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAATTTTATGAACGGCAATACCA 6895 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412 || || || || | || ||||| | ||||||| |||| || ||||| ||||| || || Sbjct 6894 ATACCACCAGCACTCTTTGAGATGAGTGCGCATTGTTTCAAGGTATCGTAGATACCATCG 6835 Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAGTTC 63470 || ||| || |||| | || || ||||| ||||||| |||||| | || | Sbjct 6834 ATTGAATCCTCTTTCATTTGAACTAAGAAACAAGAAGACATTTGTGGTGATG--GTGTAC 6777 Query 63471 CCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACG 63530 | ||||| |||||||| || | || ||||| || |||| || || | | ||||| | Sbjct 6776 CTGCATTGAATAAGGTTGGTGTGGCATGAGTGAATAATTTCTCTGATAAACGTTTGTATG 6717 Query 63531 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 | | ||||| || || || || ||| || || | || |||||||| ||||||| Sbjct 6716 TGTTGATAGCAGAATCAATGTCTTCGCCATGGATACCAATTGAAACACGCATCAACATGT 6657 Query 63591 GCTGAGGTCTTTCAACGATCTTG 63613 | || || | ||| ||||| ||| Sbjct 6656 GTTGTGGACGTTCGACGATTTTG 6634 >seq58 Length=51432 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 80784 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 80843 || || |||||||||||||| || || || |||||| |||| |||| |||| | | Sbjct 12862 GTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGATTTA 12921 Query 80844 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGTACATTTCAACGTAAACCG 80903 ||||| |||| |||| ||||| | || ||||||||||||||||| ||| | ||||| Sbjct 12922 GCAAATCAAGGTAAAACCGTTATTATTGCTGCACTCGATGGTACATTCCAAAGAAAACCA 12981 Query 80904 TT 80905 || Sbjct 12982 TT 12983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633617965051200