Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1199 168 6e-37 seq90 149 5e-31 seq102 136 3e-27 seq641 129 5e-25 >seq1199 Length=11192 Score = 168 bits (186), Expect = 6e-37 Identities = 181/237 (76%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| ||| | || |||||| |||||||| | ||||| || || Sbjct 949 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 890 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || | || || |||| |||| |||| || || |||||||| || ||||| || Sbjct 889 GATAACATTGAAAATGTCA---AAGCCAAAATCCAA-GATAAAGAAGGTATCCCACCAGA 834 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | |||||||| || |||||||||||||||| ||| ||| | ||||| Sbjct 833 TCAACAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTA 774 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 |||||| |||||||||||||| || |||||||| |||| |||||||||||||||| Sbjct 773 CAATATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGAGGAAATTA 717 Score = 154 bits (170), Expect = 1e-32 Identities = 174/230 (76%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || || || |||||| |||||||| | ||||| || || Sbjct 1405 ATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACATTGGAAGTTGAAGGTTCA 1346 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || | || || | || |||| |||| ||| || |||||||| || ||||| ||| Sbjct 1345 GATAACATTGAA--AATGTTAAAGCCAAAATTCAA-GATAAAGAAGGTATCCCACCAGAC 1289 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || || |||||||||||||||| ||| ||| | |||||| Sbjct 1288 CAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTAC 1229 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| |||||||||||||| || |||||||| |||| ||||||| || Sbjct 1228 AATATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGTGG 1179 Score = 145 bits (160), Expect = 7e-30 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || |||||| |||||||| | ||||| || || Sbjct 1177 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 1118 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || | || || | || |||| |||| ||| || |||||||| |||||||| ||| Sbjct 1117 GATAACATTGAA--AATGTTAAAGCCAAAATTCAA-GATAAAGAAGGTATTCCACCAGAC 1061 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || || |||||||||||||||| ||| ||| | |||||| Sbjct 1060 CAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTAC 1001 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || |||||||||||||| || || || || || || ||||||| || Sbjct 1000 AACATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 951 >seq90 Length=44396 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || |||||| ||||||| ||||||| || || Sbjct 14206 ATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGTTCA 14265 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||| ||||| |||| |||| || | ||| ||||||||||| || ||||| || Sbjct 14266 GACAACATCGAAAACGTCA---AAGCCAAGATTCAA-GACAAAGAAGGTATCCCACCAGA 14321 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || |||| |||||||| |||||||||||||||| ||| ||| | |||||| Sbjct 14322 TCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTA 14381 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || || ||||| |||| ||||||| || Sbjct 14382 TAACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 14432 >seq102 Length=41085 Score = 136 bits (150), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || |||||| ||||||| | ||||| || ||| Sbjct 389 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCT 448 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || | ||| || |||| | || || | ||| ||||||||||| |||||||| || Sbjct 449 GATAATATTGAAAATGTCA---AGGCCAAGATTCAA-GACAAAGAAGGTATTCCACCAGA 504 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | ||||| || || |||||||||||||||| || ||| | ||||| Sbjct 505 TCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTA 564 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || |||||||||||||| || || || || || || ||||||| || Sbjct 565 CAACATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 615 Score = 122 bits (134), Expect = 8e-23 Identities = 117/149 (79%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||| || | ||| ||||||||||| |||||||| || ||||| | | ||||| || Sbjct 240 AAGCCAAGATTCAA-GACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCT 298 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || |||||||||||||||| ||| ||| | ||||||||||| |||||||||||||| Sbjct 299 GGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAATATCCAAAAAGAATCCACT 358 Query 25197 CTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| |||| ||||||| || Sbjct 359 CTTCACTTAGTTTTAAGATTAAGAGGTGG 387 Score = 114 bits (126), Expect = 1e-20 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||| || | ||| ||||||||||| |||||||| || ||||| || | ||||| || Sbjct 696 AAGCCAAGATTCAA-GACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCT 754 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || |||||||||||||||| ||| ||| | |||||||| || |||||||||||||| Sbjct 755 GGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACT 814 Query 25197 CTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || || || || | ||||| || || || Sbjct 815 CTTCACTTGGTTCTCAGATTGAGAGGTGGTAACTA 849 Score = 111 bits (122), Expect = 1e-19 Identities = 114/148 (77%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTT-GCCG 25137 || ||||||| || |||||||| |||||||| || ||||| | | |||||| || | Sbjct 12 GCCAAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTTCGCTG 71 Query 25138 GCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGC 25197 | || ||||||||||||| || ||| | |||||||| || |||||||||||||| | Sbjct 72 GTAAGCAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACTC 131 Query 25198 TACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| || || ||||||| || Sbjct 132 TCCATTTAGTTCTCAGATTAAGAGGTGG 159 >seq641 Length=13309 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA--GTCGT 25056 |||||||| ||||| || || | || |||||| |||| ||| ||||||| || || || Sbjct 13198 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 13139 Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||| ||||| | ||| |||||| || |||||||| ||||| || || | Sbjct 13138 --GACAACATCGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATC 13081 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | ||||| || || |||||||| ||||||| || ||| | ||||| | Sbjct 13080 AACAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATA 13021 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||||||||| || || ||||| || || || ||||||| || Sbjct 13020 ATATCCAAAAAGAATCAACTCTCCATTTGGTACTCAGATTAAGAGGTGG 12972 Score = 102 bits (112), Expect = 7e-17 Identities = 142/194 (73%), Gaps = 10/194 (5%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA--GTCGT 25056 |||||||| ||||| || || | || |||||| |||| ||| ||||||| || || || Sbjct 12742 ATGCAAATCTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 12683 Query 25057 CTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || | || ||| | || |||| || | || || |||||||| |||||||| | Sbjct 12682 --GATAACATTGAG--AATGTTAAAGCCAAGATCCAA-GATAAAGAAGGTATTCCACCAG 12628 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | ||||| || || |||||||| ||||||| ||| ||| | |||| Sbjct 12627 ATCAACAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATT 12568 Query 25174 ACAATATTCAAAAA 25187 |||| ||||||||| Sbjct 12567 ACAACATTCAAAAA 12554 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || || |||||||| ||||||| ||| ||| | |||||| Sbjct 13309 CAACAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTAC 13250 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || || |||||||| || || ||||||| || Sbjct 13249 AACATTCAAAAAGAATCAACTCTCCATTTAGTACTCAGATTAAGAGGTGG 13200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318641740180