Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1199 95.1 1e-14 seq102 89.7 4e-13 >seq1199 Length=11192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 111180 TTTAAAA----ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAA 111235 ||||||| |||||||||||||| ||||| | || || |||||||| || ||||| Sbjct 1416 TTTAAAACATTATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACATTGGAAG 1357 Query 111236 CGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTC 111295 ||| ||| ||| | || ||| |||||| || |||||||| | | Sbjct 1356 TTGAAGGTTCAGATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCC 1297 Query 111296 CCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 111355 | || |||||| | || |||| || || |||||||| |||||| | ||| | Sbjct 1296 CACCAGACCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTTTAT 1237 Query 111356 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 | ||||| ||||| ||||||||||| ||||| |||||||| || Sbjct 1236 CAGATTACAATATCCAAAAAGAATCCACACTCCATTTAGTTTT 1194 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || || |||||||| || | ||| ||| Sbjct 949 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 890 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| ||| | || ||| ||||| || |||||||| | || |||||| Sbjct 889 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAA 830 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | |||| ||| || |||||||| |||||| | ||| | | ||||| ||| Sbjct 829 CAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 770 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || ||||||||||| ||||| |||||||| || Sbjct 769 ATCCAAAAAGAATCCACACTCCATTTAGTTTT 738 >seq102 Length=41085 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || ||||| || || ||| | || ||| || Sbjct 161 ATGCAAATCTTTGTTAAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGT 220 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| ||| | || ||| || ||| ||||||||||| |||| |||||| Sbjct 221 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 280 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | |||| || || |||||||| |||||| | ||| | | ||||| ||| Sbjct 281 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 340 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || ||||||||||| || || || ||||| || Sbjct 341 ATCCAAAAAGAATCCACTCTTCACTTAGTTTT 372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423030863922400