Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq90 179 3e-40 seq1199 163 2e-35 seq641 152 4e-32 seq102 145 6e-30 >seq90 Length=44396 Score = 179 bits (198), Expect = 3e-40 Identities = 180/234 (77%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || |||||||| ||||| |||||||| ||||||| ||||| ||| Sbjct 14203 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14262 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | | || | ||||| || ||||||||||| || ||||| ||||| ||| Sbjct 14263 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 14322 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||||||||||| |||||||| ||||| ||||| ||| || || | |||||||| Sbjct 14323 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 14382 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| ||||| ||||| ||| | || |||||||| |||| | || ||| || Sbjct 14383 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGGTATT 14436 >seq1199 Length=11192 Score = 163 bits (180), Expect = 2e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| ||||| |||||||| |||| | ||||| ||| | Sbjct 1405 ATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACATTGGAAGTTGAAGGTTCA 1346 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | | || || | ||| ||||||||||| || || ||||| ||||| || ||| Sbjct 1345 GATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAA 1286 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| ||||| ||| || || | || |||||||| Sbjct 1285 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 1226 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || |||||||||||||| | ||||||||||| |||| Sbjct 1225 ATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATT 1188 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || |||||||| |||| | ||||| ||| | Sbjct 949 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 890 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | | || || ||||| ||||| ||||| || || ||||| ||||| |||||| Sbjct 889 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAA 830 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| ||||| ||| || || | || |||||||| Sbjct 829 CAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 770 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||||||||||| | ||||||||||| |||| | ||||| Sbjct 769 ATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGAGG 723 Score = 149 bits (164), Expect = 5e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | || |||||||| |||| | ||||| ||| | Sbjct 1177 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 1118 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | | || || | ||| ||||||||||| || || ||||||||||| || ||| Sbjct 1117 GATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1058 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| ||||| ||| || || | || ||||||||| Sbjct 1057 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 998 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||||||||| Sbjct 997 ATCCAAAAAGAATCCAC 981 >seq641 Length=13309 Score = 152 bits (168), Expect = 4e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| ||||| ||||| || ||||||||||||| |||| | | Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCA 12911 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | || || | ||| ||| |||||||| || || ||||||||||| |||||| Sbjct 12910 GATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 12851 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || ||||| || || ||| || || | || ||||||||| Sbjct 12850 CAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12791 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| |||||||| Sbjct 12790 ATTCAAAAGGAATCCAC 12774 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| | || |||||||| | || || ||||| ||| | Sbjct 13198 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 13139 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | || || | || ||||| ||||| || || |||||||| || |||||| Sbjct 13138 GACAACATCGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 13079 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| || || ||| ||| || |||| ||||| || Sbjct 13078 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATAAT 13019 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| || | ||||| || Sbjct 13018 ATCCAAAAAGAATCAACTCTCCATTTGGT 12990 Score = 125 bits (138), Expect = 6e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | || |||||||| | || || ||||| ||| | Sbjct 12742 ATGCAAATCTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 12683 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | | || || | ||| || || ||||| || || ||||||||||| |||||| Sbjct 12682 GATAACATTGAGAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAA 12623 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| || || ||| || || | || ||||||||| Sbjct 12622 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12563 Query 22399 ATTCAAAAA 22407 ||||||||| Sbjct 12562 ATTCAAAAA 12554 >seq102 Length=41085 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | || || || || |||| | || || ||| | Sbjct 617 ATGCAAATCTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAGGTCGAAGGTAGT 676 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | | || || | ||| || ||||||||||| || ||||||||||| |||||| Sbjct 677 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 736 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| ||||| ||| || || |||| ||||||||| Sbjct 737 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 796 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||||||||| | || || ||| | ||||| | || ||| Sbjct 797 ATCCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGGT 844 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | || |||||||| |||| | ||||| ||| | Sbjct 389 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCT 448 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | || || |||| || ||||||||||| || ||||||||||| |||||| Sbjct 449 GATAATATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 508 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || ||||| ||||| ||| ||| || |||| ||||||||| Sbjct 509 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAAC 568 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||||||||| Sbjct 569 ATCCAAAAAGAATCCAC 585 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | || || || || |||| | || || ||| | Sbjct 161 ATGCAAATCTTTGTTAAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGT 220 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||| | | || || | ||| || ||||||||||| || ||||||||||| |||||| Sbjct 221 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 280 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || ||||| ||||| ||| || || | || |||||||| Sbjct 281 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 340 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || |||||||||||||| | || |||||||| |||| Sbjct 341 ATCCAAAAAGAATCCACTCTTCACTTAGTTTTAAGATT 378 Score = 111 bits (122), Expect = 1e-19 Identities = 107/136 (79%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTT-GCCGGCA 22360 |||||| ||||| || || ||||||||||| ||||||||| | | || ||| || || | Sbjct 15 AAAAATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTTCGCTGGTA 74 Query 22361 AACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATAC 22420 | || ||||| ||| ||| || |||| ||||||||||| |||||||||||||| | | Sbjct 75 AGCAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACTCTCC 134 Query 22421 ATTTAGTTTTGCGATT 22436 |||||||| | |||| Sbjct 135 ATTTAGTTCTCAGATT 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718935449180