Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq641 136 9e-27 seq102 122 2e-22 seq1199 118 3e-21 seq90 116 9e-21 >seq641 Length=13309 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | ||| | || |||||||||||||||||| || | | Sbjct 12972 CCACCTCTTAATCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAG 13031 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || ||||| |||||||| |||||||| || ||||| ||||| |||| Sbjct 13032 AGAGTACGGCCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTG---ATCTGGA 13088 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||||||||| |||||||| || || || ||||| || || || ||| Sbjct 13089 GGAATACCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTCACTACCTTCA 13148 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || || || || || || || || || || || || ||||| Sbjct 13149 ACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 288285 TTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGAT 288344 |||||| || || || || | || || || || ||||| |||||||| |||||||| || Sbjct 12554 TTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAAT 12613 Query 288345 CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 ||||| |||||| ||| || ||||||||||| ||||| || ||||| || || || Sbjct 12614 GAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTGGCTTTAACATTCTC 12673 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || ||| || ||| |||||||| || || || || || || || || || || || Sbjct 12674 AATGTTATCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAA 12733 Query 288465 TATCTGCAT 288473 || ||||| Sbjct 12734 GATTTGCAT 12742 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| || || | |||| ||| ||| ||||| || || || || | Sbjct 12744 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 12803 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| |||||||| |||||||| |||| | |||||| ||| Sbjct 12804 AGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGA 12863 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||||||||| || || || | ||| || ||||| ||| ||| ||| ||| Sbjct 12864 ATACCTTCTTTATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCT---TTCA 12920 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || || | || || || || || ||||| Sbjct 12921 ACTTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 >seq102 Length=41085 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| || || | |||| ||| |||||||||||| || || || | | Sbjct 843 CCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 784 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || |||||||||||||| || ||||| || ||||| |||||| ||| Sbjct 783 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGA 724 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || || || || ||||| || ||||| || ||| || ||| || Sbjct 723 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACC 664 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || || || || || || ||||| Sbjct 663 TCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCAT 617 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||||||||||||||| || || | || || || || |||||||||||| Sbjct 363 TGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCTTCTAATTGT 304 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||| || | | |||||| ||| || |||||||| || || || || Sbjct 303 TTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTTG 244 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || ||||| || ||| || ||| || || | ||||| ||||| || || Sbjct 243 GCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGATAGTCTTGCCAGTG 184 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || ||||| Sbjct 183 AGAGTTTTAACAAAGATTTGCAT 161 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| || || | |||| ||| |||||||||||| || || || | | Sbjct 615 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 556 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || |||||||||||||| || ||||| || | | |||||| ||| Sbjct 555 AGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 496 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || || || || || || || ||||| ||| ||| ||| ||| Sbjct 495 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACT 436 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || || || ||||| || || || || ||||| Sbjct 435 TCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 >seq1199 Length=11192 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | | ||| || || | |||| ||| |||||||||||| || || | Sbjct 947 CATG-CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAAT 1005 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || || |||||||||||||| || ||||| || ||||| ||||| Sbjct 1006 CAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTG 1065 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || ||||||||||| || ||||| ||||| || ||||| || ||| || Sbjct 1066 GTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTT 1125 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | ||||| || || || || ||||| || || || || ||||| Sbjct 1126 CGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 Score = 116 bits (128), Expect = 9e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||||||||| || || | | || || || |||||||||||||| || ||||| Sbjct 1214 TTCTTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTGTTTACCAGCGAA 1273 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || ||||| ||||| |||||| ||||||||||| || ||||| ||||| || || Sbjct 1274 AATGAGACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGAATTTTGGCTTTAACATT 1333 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || ||| ||| ||||| | ||||| || || || || | || || || Sbjct 1334 TTCAATGTTATCTGAACCTTCAACTTCCAATGTGATGGTTTTACCAGTTAATGTTTTAAC 1393 Query 288462 GAATATCTGCATTATGTTATTCTAATATT 288490 || || ||||| ||||| || |||||| Sbjct 1394 AAAAATTTGCATAATGTT-TTAAAATATT 1421 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||||||||| || || | | || || || |||||||||||||| ||||| || Sbjct 758 TTCTTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAA 817 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| |||||| ||||||||||| |||||||| ||||| || || Sbjct 818 AATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATT 877 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || ||| ||| ||||| | ||||| || || || || ||||| || || Sbjct 878 TTCAATGTTATCTGAACCTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTAC 937 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 938 AAAGATTTGCAT 949 >seq90 Length=44396 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| ||||| |||| | || || || |||||||||||||| || || || Sbjct 14397 TTCCTTTTGGATGTTATAATCGGATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAA 14338 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| |||||| |||||| |||||||| || || || || ||||| ||||| Sbjct 14337 GATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTT 14278 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || || ||| |||||||| ||||| || || || || | || || || Sbjct 14277 TTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAAC 14218 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 14217 GAAGATTTGCAT 14206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179627617421416