Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq102 113 5e-20 seq1199 109 5e-19 seq641 105 7e-18 seq319 84.2 2e-11 >seq102 Length=41085 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | |||||| || || | |||| || ||||||||||| ||||||||||| | Sbjct 844 ACCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 785 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || | ||||| | || || || || ||||||| || || || || || || Sbjct 784 GAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGG 725 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTG-TATCACCGGCGTCCA 64394 ||| |||||||| ||||| | | || |||||| | | || || |||||| | || | Sbjct 724 AATACCTTCTTTGTCTTG-AATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGA 666 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||| || | |||||| || || | ||||| || || |||||||| Sbjct 665 CCTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCAT 617 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| |||| || ||||||||||| || |||||||| | | || || Sbjct 378 AATCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAAAGAGTACGA 319 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || || |||| | | || || || || ||||| |||||| Sbjct 318 CCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCT 259 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTG-TATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | | || |||||| | | || || |||||| | || || |||| || Sbjct 258 TTGTCTTG-AATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGT 200 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||||||| || | |||||| || || |||||||| Sbjct 199 GATAGTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCAT 161 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| || || | |||| || ||||||||||| ||||||||||| | || || || Sbjct 606 AATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGG 547 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || || |||| | | || || || || ||||| |||||| Sbjct 546 CCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCT 487 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| || || ||| ||| || | ||||| | || ||||| | || Sbjct 486 TTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACTTCCAAGGTG 427 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || | |||||| || || |||||||| Sbjct 426 ATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| || |||| ||| | || ||||||||||| ||||||||||| | || || || Sbjct 150 AATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGG 91 Query 64286 GCGTCTTCAAGCTGCTTGCCGGC-ATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344 | ||||| | ||||| || || | |||| | | || || || || ||||| ||||| Sbjct 90 CCATCTTCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTC 31 Query 64345 TTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||| |||||| || || Sbjct 30 TTTATCTTGGATTTTTGGCCTT 9 >seq1199 Length=11192 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| || || | |||| || ||||||||||| ||||||||||| | | || || Sbjct 960 AATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGA 1019 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || || ||||||| || || ||||| || ||||| |||||| Sbjct 1020 CCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCT 1079 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTG-TATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| |||||| | | || || |||| | || ||||||| || Sbjct 1080 TTATCTTG-AATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGT 1138 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || | |||||| || || |||||||| Sbjct 1139 GATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || ||||||||||| || |||||||||| | || || Sbjct 1188 AATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGA 1247 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || || ||||||| || || ||||| || || || |||||| Sbjct 1248 CCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGGATACCTTCT 1307 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTG-TATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| |||||| | | || || |||| | || ||||| | || Sbjct 1308 TTATCTTG-AATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAACTTCCAATGT 1366 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || || ||||| || ||||||||||| Sbjct 1367 GATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCAT 1405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || ||||||||||| || |||||||||| | || || Sbjct 732 AATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGA 791 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || ||| |||| | | || || || || || || |||||| Sbjct 792 CCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGATCTGGTGGGATACCTTCT 851 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| ||| || | |||| | || ||||||| || Sbjct 852 TTATCTTGGA-TTTTGGCTTTGACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGT 910 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || | ||||||||| || |||||||| Sbjct 911 GATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 >seq641 Length=13309 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| || || | ||| | || ||||||||||| || || ||||| | || || || Sbjct 12981 AATCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGG 13040 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || || ||||||| || || || || |||||||| |||||| Sbjct 13041 CCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCT 13100 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| ||||| ||||||| || | | |||| | || ||||| | || Sbjct 13101 TTATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTCACTACCTTCAACTTCGAGTGTA 13160 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || | ||||| || ||||||||||| Sbjct 13161 ATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 64255 TTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAAT 64314 |||||||||||||||||| | | || || | ||||| | || || || || |||| Sbjct 12554 TTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAAT 12613 Query 64315 GAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCT 64373 ||| || || || || || ||||| |||||||| ||||| | | || ||||| ||| || Sbjct 12614 GAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGA-TCTTGGCTTTAACATTCT 12672 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | |||||| | || ||||| | || | ||| || || || | ||||| || | Sbjct 12673 CAATGTTATCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAA 12732 Query 64434 AAATTTGCAT 64443 | |||||||| Sbjct 12733 AGATTTGCAT 12742 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| || || | |||| || ||||| ||||||||||||||||| | | || || Sbjct 12753 AATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGA 12812 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || || || |||| | | || || || || ||||| |||||| Sbjct 12813 CCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCT 12872 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| || ||| || ||| || | |||| | || ||||| | ||| Sbjct 12873 TTATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAACTTCAAGAGTG 12932 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||| || || || ||||| || || |||||||| Sbjct 12933 ATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 >seq319 Length=25483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 282/427 (66%), Gaps = 19/427 (4%) Strand=Plus/Minus Query 155010 TCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCTTGA 155066 ||||||||||| ||||| || || ||||| | || ||||| | || || |||||| Sbjct 7071 TCGGCGTGCCATGGCTCCAAGTAAACGGCAAAGGCACCTTTTCTCTTGCCACCACCTTGA 7012 Query 155067 TCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTG 155126 || |||| ||| || || |||| | || || | || |||| ||| || || || Sbjct 7011 TCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTGGTACCAAACCATTGCTAGTA 6952 Query 155127 CCGTTGGTGCCACG--TATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCA 155184 || ||||| ||||| ||| | || || |||||| ||||||||| || || | Sbjct 6951 CCATTGGTACCACGAATATAACTTTG-AGC-AGCACGAATTTTATGAACGGCAATACCAA 6894 Query 155185 AACCTCC-GCCGTATTT-AGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTT 155242 ||| || || | ||| |||| |||||| || ||| || ||||| || || | Sbjct 6893 TACCACCAGCACTCTTTGAGATGAGTGCGCATTGT--TTCAAGGTATCGTAGATACCATC 6836 Query 155243 GATGCTGTCTTCTTTCAACGTCAAC-AAGAAACACGAAGATAATTGAGGTTGAGGGCAGC 155301 ||| || |||||| | | ||| |||||||| ||||| | ||| ||| || | Sbjct 6835 GATTGAATCCTCTTTC-ATTTGAACTAAGAAACAAGAAGACATTTGTGGTGATGGTGTAC 6777 Query 155302 CGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAA---GTTGT 155358 | || ||||| || || | || || || || | ||| | | | ||| |||| Sbjct 6776 CTGCATTGAATAAGGTTGGTGTGGCATGAGTGAATAATTTCT---CTGATAAACGTTTGT 6720 Query 155359 AAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCA 155418 | || | ||| || | |||||||| || || ||||| || | || ||||||| || Sbjct 6719 ATGTGTTGATAGCAGAATCAATGTCTTCGCCATGGATACCAATTGAAACACGCATCAACA 6660 Query 155419 TGTGTTG 155425 ||||||| Sbjct 6659 TGTGTTG 6653 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 154596 TTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAATTACTG 154655 || |||||||||||||| || | | ||||| | ||||||| || | |||||| Sbjct 7488 TTACAAACGGCAATTTCATCTGGTGATGTATATTGAATGATTTCTGTACAAAGATTACTA 7429 Query 154656 CATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAA 154715 | | |||||| || | || || ||||| |||||| ||||| || || || ||||| Sbjct 7428 CTACTAATGGTACCTAAATTCTTTTGATTGGATTTGGCATTGCAAGCATCCTTATACAAG 7369 Query 154716 ATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAAT 154753 ||| | || || || ||||| ||||| | ||| ||||| Sbjct 7368 ATGAATGGTGTACCAGTTTCAACTTGAGATTCCATAAT 7331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499633732867680