Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1199 131 2e-25 seq641 125 6e-24 seq90 120 3e-22 seq102 95.1 1e-14 >seq1199 Length=11192 Score = 131 bits (144), Expect = 2e-25 Identities = 174/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 45102 TTTTATTTTA--TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGA 45159 |||| ||||| ||||||| | | || || |||| ||| || || ||||| ||||||| Sbjct 709 TTTTTTTTTAATTTCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGA 768 Query 45160 TATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTT 45219 |||| ||||| | || | ||| || |||||||| ||||| | || |||| || Sbjct 769 TATTGTAATCTGATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTT 828 Query 45220 GCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGT 45279 | || || || || || |||||||||||||| ||||| ||||| ||| | | | | Sbjct 829 GTTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATGTTAT 888 Query 45280 CGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCA 45339 | ||| |||||||| | || | ||||| || || |||||||||||||| ||||||| Sbjct 889 CTGAACCTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCA 948 Query 45340 T 45340 | Sbjct 949 T 949 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| || || ||||| ||||||||||| ||||| | || | | Sbjct 1191 CTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGACCA 1250 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || ||| | || | ||||| ||||| || || || ||||||||| Sbjct 1251 TCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGGATACCTTCTTTA 1310 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||| | ||| | | | || ||| || ||||| | || | Sbjct 1311 TCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAACTTCCAATGTGATG 1370 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||| |||||||||||||| Sbjct 1371 GTTTTACCAGTTAATGTTTTAACAAAAATTTGCAT 1405 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| |||||||| || ||||| | || | ||| || |||||| Sbjct 975 TGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGT 1034 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||| ||||| || ||||| |||||||||||||||||||| Sbjct 1035 TTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATTTTG 1094 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | | | || ||| |||||||| | || | ||||| || || Sbjct 1095 GCTTTAACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGTGATGGTTTTACCAGTG 1154 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 |||||||| ||||| |||||||| Sbjct 1155 AGAGTTTTAACAAAGATTTGCAT 1177 >seq641 Length=13309 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || |||||||| ||||||||||||||||| || || ||| |||||||| Sbjct 12995 ATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGGCCATCTTCCAATTG 13054 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| |||||| | || | ||||| || || || ||||| |||||||||||||| ||||| Sbjct 13055 TTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATTTT 13114 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | ||| | | |||| | || |||||||| |||| ||||| || || Sbjct 13115 AGCCTTTACATTTTCGATGTTGTCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGT 13174 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||||||||||||| Sbjct 13175 GAGGGTTTTAACAAAAATTTGCAT 13198 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || ||||| | || | ||| ||||||||| Sbjct 12768 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGT 12827 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || |||||| | ||||||| ||| || || || ||||| ||||||||||||||||| ||| Sbjct 12828 TTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATCTTT 12887 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | | || || || ||||| ||||| | || || || ||| Sbjct 12888 GTTTTAACATTTTCAATATTATCTGAGCTTTCAACTTCAAGAGTGATAGTCTTACCAGTT 12947 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| |||||||| Sbjct 12948 AATGTTTTAACAAAGATTTGCAT 12970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||||||||| |||||| | || | ||||| || || || ||||| |||||||| Sbjct 12587 ATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTT 12646 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||| || || ||| | || | | | || | || |||||||| |||| Sbjct 12647 ATCTTGGATCTTGGCTTTAACATTCTCAATGTTATCACTACCTTCAACTTCGAGTGTAAT 12706 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| ||||| |||||||| Sbjct 12707 GGTTTTACCAGTGAGGGTTTTAACAAAGATTTGCAT 12742 >seq90 Length=44396 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || || ||||||||||||||||| ||||||||| | || | | Sbjct 14420 CTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGATAAAGTACGACCA 14361 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || || | || | ||||| || || || || || |||||||| Sbjct 14360 TCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTG 14301 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || ||||| ||| | | |||| ||| || ||||||||||| | Sbjct 14300 TCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATG 14241 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || |||| ||||| || || ||||||||| Sbjct 14240 GTTTTACCAGTTAAGGTTTTAACGAAGATTTGCATC 14205 >seq102 Length=41085 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| || || || ||||| ||||||||||| ||||| | || | | Sbjct 375 CTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCA 316 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || ||| | || |||| ||| || || || ||||| |||||||| Sbjct 315 TCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTG 256 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || ||| | ||| | | | || | ||||| || | || | Sbjct 255 TCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGATA 196 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || |||||||| ||||| |||||||| Sbjct 195 GTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCAT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993188129120