Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1199 122 2e-22 seq641 105 2e-17 seq102 100 7e-16 >seq1199 Length=11192 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | ||| ||||| || || ||||||| |||||| |||| | ||| | || Sbjct 962 TCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACC 1021 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || ||||| |||||||| || ||||| || ||| |||||| Sbjct 1022 ATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTT 1081 Query 199534 CTCCTGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 || ||||| ||| |||| | | ||| | | | |||| ||| || || || |||| Sbjct 1082 ATCTTGAAT-TTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGTGA 1140 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||||| ||||||||||| ||||| ||||| Sbjct 1141 TGGTTTTACCAGTGAGAGTTTTAACAAAGATTTG 1174 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || || ||||||| ||||| || | ||||| | |||||||| | || Sbjct 1203 TGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTGT 1262 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||| |||||||| || ||||| || || |||||| || ||||| ||| Sbjct 1263 TTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGAAT-TTT 1321 Query 199547 TGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||| | | ||| | | | |||| ||| || ||||| ||||| || ||||| || Sbjct 1322 GGCTTTAACATTTTCAATGTTATCTGAACCTTCAACTTCCAATGTGATGGTTTTACCAGT 1381 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | ||||| ||||||||||| Sbjct 1382 TAATGTTTTAACAAAAATTTG 1402 >seq641 Length=13309 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| || || ||||||| || || |||| | ||| | || Sbjct 12983 TCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGGCC 13042 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || || || ||||| |||||||| || || || ||| ||| |||||| Sbjct 13043 ATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTT 13102 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || || || ||| || ||||| | |||| | ||| || || | || || Sbjct 13103 ATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTCACTACCTTCAACTTCGAGTGTAAT 13162 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| ||||| ||||||||||| Sbjct 13163 GGTTTTACCAGTGAGGGTTTTAACAAAAATTTG 13195 >seq102 Length=41085 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | ||| ||||| || || ||||||| |||||| |||| | ||| | || Sbjct 604 TCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCC 545 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || ||||| || | | || || || || ||| |||||| Sbjct 544 ATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTT 485 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || |||||||| ||| || ||| | | || | ||| || ||||| ||||| Sbjct 484 GTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACTTCCAAGGTGAT 425 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||||||||| ||||| ||||| Sbjct 424 GGTTTTACCAGTGAGAGTTTTAACAAAGATTTG 392 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || || ||||||| ||||| |||| | ||| | |||||||| | || Sbjct 364 GTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCTTCTAATTG 305 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || || ||||| || | | || || || || ||| |||||| || |||||||| Sbjct 304 TTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTT 245 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || ||| | | | || | ||| || || || ||||| ||||| || || Sbjct 244 GGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGATAGTCTTGCCAGT 185 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||||||||| ||||| ||||| Sbjct 184 GAGAGTTTTAACAAAGATTTG 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178894834058724