Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq624 95.1 8e-15 seq90 95.1 8e-15 seq641 86.0 4e-12 >seq624 Length=13746 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGA 42571 ||||||||||||||||||| ||| || | ||||||| || | || || |||||| Sbjct 820 ATGTTACCTAAATCACCAACATGACGATTTTCATCACTTGGAGCACCATGATCTTTACCG 761 Query 42572 AAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGT 42631 || || ||||| ||| |||||| |||| |||||||| ||||| || || ||||| Sbjct 760 AATGGGTTAAAGTGTGGACCAGCACTAATACAGCCATTGGTTGTATCACCGAAAGCATGT 701 Query 42632 ATATGAAAACCGTGATAACC 42651 | ||| |||||||| | ||| Sbjct 700 ACATGGAAACCGTGTTCACC 681 >seq90 Length=44396 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| || |||||||||| ||| || |||| || |||||||| ||| |||| Sbjct 14397 TTCCTTTTGGATGTTATAATCGGATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAA 14338 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | ||| || ||||| | || | ||||||||||| || || ||| | | Sbjct 14337 GATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTT 14278 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | |||||| | ||| || || | ||| || |||||||| ||||| ||||| || Sbjct 14277 TTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAAC 14218 Query 39708 GAAGATCTGCAT 39719 |||||| ||||| Sbjct 14217 GAAGATTTGCAT 14206 >seq641 Length=13309 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| || | |||| ||| ||||| || || ||||| | | | || |||| Sbjct 12759 AGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCT 12818 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||||||| || | ||||| || | || ||||| | || | |||||||| || Sbjct 12819 TCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCT 12878 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 || ||| ||||| | | | | |||| |||||| || || | ||| || || Sbjct 12879 TGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAACTTCAAGAGTGATAGTC 12938 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| ||||| || ||||| ||||| Sbjct 12939 TTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 ||||||||||| | ||| ||||||||| ||||||||||| | | | || |||| Sbjct 12987 AGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGGCCATCT 13046 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 ||||||||||| || | ||||| | ||| || ||||| | || | |||||||| || Sbjct 13047 TCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTATCT 13106 Query 39628 CATATTTT-TTGTTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 ||||| |||| || ||| | ||| || | ||| || || | ||||| | Sbjct 13107 TGGATTTTAGCCTTTACATTTTCGATGTTGTCACT--ACCTTCAACTTCGAGTGTAATGG 13164 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||| || | ||||| || || || ||||| Sbjct 13165 TTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347362098119276