Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_014595.1 Length=170605 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 >seq1 Length=107950 Score = 123 bits (136), Expect = 3e-23 Identities = 186/259 (72%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 142874 TCGTGCGGACTAAACAGAGTGATGTAATCATT-CTTAGCCAGACGTTCCAT-CATCAGGT 142931 || ||||| || ||||| || || | || || | || |||| || | || ||||||| Sbjct 66103 TCATGCGGGCTGAACAGCGTAATATTCTCGTTGCGTA-CCAGGCGG-CGATACATCAGGC 66160 Query 142932 TATTCAGCTGGACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGT 142991 || | | || |||||||||| ||| | | ||||| || || | ||| ||| | Sbjct 66161 GGTTGATCATTACGCCATAGTCCAGATGACGAACACGGTTCTCCTCGATGCCGCGGTTAT 66220 Query 142992 TCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAG 143051 |||||| || || | | |||||||||||| |||||||||||| || |||| || || | Sbjct 66221 TCTTCAATACCAGCAGACTTTCAACTTCCAGATGCCAAATAGGGTAGAAAGCCGTCGCTG 66280 Query 143052 CGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCCGTTTGGAAATGTTTCCAGA 143111 |||| || || | ||||| || || |||||||| ||||| || ||||| |||||| | Sbjct 66281 CGCCACCTCGAACGCCACCCTGCGAGCATGATTTCACAGCGGTCTGGAAGTGTTTCAGAA 66340 Query 143112 ACGGAATAACACCAGTATG 143130 | || || || ||||| || Sbjct 66341 AGGGGATTACGCCAGTGTG 66359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545795910352800