Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq104 199 5e-46 >seq104 Length=42898 Score = 199 bits (220), Expect = 5e-46 Identities = 477/704 (68%), Gaps = 42/704 (6%) Strand=Plus/Minus Query 154443 ATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTGTG 154502 ||| ||||| | |||||||||||||||||||||||||| | | ||| | || || Sbjct 38299 ATGATTCCATTGGGCAGTTGCACAATGAAATTAAATGCCACCACTGAAATGTATCCAGTT 38240 Query 154503 TCATGGGAAGAGTTTG---CTAACGTGCATCCA--CATAC-ACCTATGATACAGACCATG 154556 |||||| ||||||| ||| | |||||| | ||| | | | || || | || Sbjct 38239 TCATGGCCAGAGTTTAACTCTA---TTCATCCATTCGTACCAGCCA--AT-CAATCATTG 38186 Query 154557 GGTTATCAGAAAATTATAGATGAC-TTACAGAAATGGTTATGTGATATCACAGGGTTTGA 154615 |||||| || |||| | || | || || | ||| |||||||| | || || || || Sbjct 38185 GGTTATAAGGAAATGTTTGAATCCATTTCAAATATG-TTATGTGAGGTAACTGGTTTCGA 38127 Query 154616 TTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAAT 154675 | | || |||||||| || || || || || ||||| || || || | | | ||| Sbjct 38126 TGGTTGTTCTTTACAACCAAATGCTGGCTCTCAAGGTGAATACGCTGGTTTAATGGTAAT 38067 Query 154676 CCAAGCATAC----CATCAAG-GATCAGGAGATGATAAAAGAAATGTATGTTTGATACCA 154730 | | || | |||| | ||| || | ||||||| || ||| | || ||| Sbjct 38066 TCGTTCCTATTTAACTTCAATTGGTCAA-AG----TCAAAGAAACGTTTGTCTCATTCCA 38012 Query 154731 GAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGT 154790 | || || ||||| |||||||| || ||||||| |||| || ||||| ||||| | Sbjct 38011 GTTTCTGCTCATGGTACTAATCCAGCAAGTGCTGCAATGGTTGGTATGAAGGTTGTTGTG 37952 Query 154791 GTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGC----AAT 154846 ||| | ||||||| ||||||| || || | ||||| | ||||| || Sbjct 37951 GTCGATTGTGATGCCAATGGTAATATTGATGTTGCCGATCTTAAAGCTAAAGCTGAAAAA 37892 Query 154847 CATGAA--TACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTA 154904 ||| || |||||| | ||| | ||||||| || || || || || ||||||||| Sbjct 37891 CATAAAGATACATTGG--CTGC----TCTTATGATCACTTATCCTTCCACTCATGGTGTA 37838 Query 154905 TTTGAAAC---TAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTA 154961 |||||| | || || | || ||| | ||| |||| |||||||||||| || Sbjct 37837 TTTGAAGAGGGTGCCA--AGGAA-ATTTGTGATATCATTCACAGCAATGGTGGTCAAGTC 37781 Query 154962 TATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGT 155021 ||| | ||||| |||||| | ||||| || || || || ||| |||| |||| Sbjct 37780 TATATGGATGGTGCAAATATGAATGCTCAAGTTGGTCTTTGTCGTCCAGGTGACATTGGT 37721 Query 155022 GCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGT 155081 || ||||| |||||| |||| | |||||||| ||||||||||||||||| ||||| ||| Sbjct 37720 GCTGATGTTTGTCATTTAAATCTTCATAAAACTTTCTGTATTCCACATGGTGGTGGTGGT 37661 Query 155082 CCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATT 155125 || || | ||||| || | || || |||||| | ||||| Sbjct 37660 CCAGGTATGGGTCCAATTTGCGTTAAAACCCATCTCGCTCCATT 37617 Score = 176 bits (194), Expect = 5e-39 Identities = 204/272 (75%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 153161 AGAATTAAAAAATATAGCAAAAGCAAACAAAGTAAAACCTAG-TCTT--ATAGGTCAAGG 153217 ||| || ||||| |||||| || ||| ||||| | ||| || | || ||| || Sbjct 39620 AGATTTGAAAAAGATAGCAGAAAAAAATAAAGTTTA---TAGATCATTCATTGGTATGGG 39564 Query 153218 ATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGTTG 153277 || ||||| ||||||||||| | || || || || ||| || | |||||||| |||| Sbjct 39563 TTATTATGGTACCATTACACCACATGTAATTCAACGTAACATTTTAGAGAATCCAGGTTG 39504 Query 153278 GTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATT 153337 ||| ||| | |||||||| ||||||||||| || ||| || | ||||| |||||| Sbjct 39503 GTATACACCATACACTCCATATCAAGCTGAAATCAGTCAAGGTCGTTTGGAGAGTTTATT 39444 Query 153338 CAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATT 153397 ||||||||||| | || |||| ||||||| |||||||| ||||| ||||| |||| Sbjct 39443 GAATTACCAAACCATGATATCAGAGTTTACAGGTTTACCAATGGCAAATGCATCATTATT 39384 Query 153398 AGATGAAGCAACTGCAGCAGCAGAAGCAATGC 153429 ||||||||||| || || || |||||||||| Sbjct 39383 GGATGAAGCAACCGCTGCCGCTGAAGCAATGC 39352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579199970436480