Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq104 172 6e-38 >seq104 Length=42898 Score = 172 bits (190), Expect = 6e-38 Identities = 294/424 (69%), Gaps = 12/424 (3%) Strand=Plus/Minus Query 159383 AAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGA 159442 ||||||| || ||| | || |||| || || ||||| |||||||| ||| || | | Sbjct 38034 AAAGAAACGTTTGTCTCATTCCAGTTTCTGCTCATGGTACTAATCCAGCAAGTGCTGCAA 37975 Query 159443 TGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAG 159502 ||| || ||||| ||||| | ||| | ||||||| |||| || || || | | Sbjct 37974 TGGTTGGTATGAAGGTTGTTGTGGTCGATTGTGATGCCAATGGTAATATTGATGTTGCCG 37915 Query 159503 ATCTAGAGAAGAAAGC----AATCATGAA--TACATTTGAACTGTCATGTATTATGATTA 159556 |||| | ||||| || ||| || |||||| | ||| | ||||||| | Sbjct 37914 ATCTTAAAGCTAAAGCTGAAAAACATAAAGATACATTGG--CTGC----TCTTATGATCA 37861 Query 159557 CATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTC 159616 | ||||| || || ||||||||||||||| || | || ||| | || ||| Sbjct 37860 CTTATCCTTCCACTCATGGTGTATTTGAAGAGGGTGCCAAGGAAATTTGTGATATCATTC 37801 Query 159617 ATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAG 159676 | ||||||||||| || ||| | |||||||||||| | ||||| || || ||||| Sbjct 37800 ACAGCAATGGTGGTCAAGTCTATATGGATGGTGCAAATATGAATGCTCAAGTTGGTCTTT 37741 Query 159677 CAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTA 159736 ||| ||||| |||||| ||||| |||||| |||| | ||||| || ||||||| Sbjct 37740 GTCGTCCAGGTGACATTGGTGCTGATGTTTGTCATTTAAATCTTCATAAAACTTTCTGTA 37681 Query 159737 TTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACAC 159796 |||||||||| ||||| ||||| || | ||||| ||| | || || |||||| | | Sbjct 37680 TTCCACATGGTGGTGGTGGTCCAGGTATGGGTCCAATTTGCGTTAAAACCCATCTCGCTC 37621 Query 159797 CATT 159800 |||| Sbjct 37620 CATT 37617 Score = 163 bits (180), Expect = 3e-35 Identities = 212/290 (73%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 157818 TGAGCATCAAGCATTGGCAGAGTTAAAAAATATAGCAAAAGCAAACAATGTAAAACCTAG 157877 |||| ||||| |||| ||| || ||||| |||||| || ||| || || | ||| Sbjct 39638 TGAGAATCAATTATTGAAAGATTTGAAAAAGATAGCAGAAAAAAATAAAGTTTA---TAG 39582 Query 157878 -TCTT--ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGT 157934 || | || ||| || || ||||| ||||| ||||| | || || || || ||| | Sbjct 39581 ATCATTCATTGGTATGGGTTATTATGGTACCATTACACCACATGTAATTCAACGTAACAT 39522 Query 157935 TCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGG 157994 | | |||||||| ||||||| ||| | |||||||| ||||||||||| || ||| || Sbjct 39521 TTTAGAGAATCCAGGTTGGTATACACCATACACTCCATATCAAGCTGAAATCAGTCAAGG 39462 Query 157995 AAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGAT 158054 | ||||| |||||| ||||||||||| | || |||| | ||||| |||| || Sbjct 39461 TCGTTTGGAGAGTTTATTGAATTACCAAACCATGATATCAGAGTTTACAGGTTTACCAAT 39402 Query 158055 AGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGC 158104 ||||| ||||| |||| ||||||||||| || || || |||||||||| Sbjct 39401 GGCAAATGCATCATTATTGGATGAAGCAACCGCTGCCGCTGAAGCAATGC 39352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588038174665920