Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq319 203 4e-47 seq58 93.3 5e-14 >seq319 Length=25483 Score = 203 bits (224), Expect = 4e-47 Identities = 613/930 (66%), Gaps = 21/930 (2%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 |||||| ||||| || |||||||| || || | |||| ||| |||||||| || || Sbjct 7507 AAGTGCGATAGAGGCGAGATTACAAACGGCAATTTCATCTGGTGATGTATATTGAATGAT 7448 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTG 47993 ||| | ||| ||||||| || | || ||||| ||||| | ||||| ||| | Sbjct 7447 TTCTGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTGGCAT- 7389 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 | || || ||||| || | || || ||||| |||||||| | |||||||| || || Sbjct 7388 -TGCAAGCATCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGAGATTCCATAATG 7330 Query 48054 GATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTTTAT-TATCATG--TTCGTA 48109 | ||||| | || | ||| || || | | ||| | | | || ||| || Sbjct 7329 GCGAACCAAAGA-TCTTGAGCTTTAATTATACGTCTTGGTAGGCCTGGTGTGGCTTCATA 7271 Query 48110 TTT--AGTATATAACTTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGACATTC 48166 ||| |||| | | | | | | | | | | || | | | || || ||| Sbjct 7270 TTTCAAGTAGAGAGCA---CGATGTTGTTCAGAGTGAGTTTCAGCAAGACCTGGTGCTTC 7214 Query 48167 ATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGG 48226 || ||||| | | | |||||| ||| | || || | |||||| ||||| Sbjct 7213 GTTTGGACAAAAGAGAGCCCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACT 7154 Query 48227 TATCCAAAGAGCTATAAATAAA-TCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTT 48285 | |||||| || ||| | || || |||| ||| | || || || ||| | || | | Sbjct 7153 GACCCAAAGGGC-ATAGAAAAGGTCTCTAGCTCTCATCTCCTCTTTACCAGTGTTTTTCT 7095 Query 48286 TAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACAC 48345 | || |||| || || | | ||| || |||||||| || || || | || | ||| Sbjct 7094 TGAGATCAATGAATTCAAAGACATCGGCGTGCCATGGCTCCAAGTAAACGGCAAAGGCAC 7035 Query 48346 CTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACA 48405 || || || ||| |||||||| | || | ||||||| || |||| | | || Sbjct 7034 CTTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCA 6975 Query 48406 TTGGGACAATACCATTTGATA-TACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTT 48464 |||| || | |||||| | || |||||||||| || |||||||||| | ||| | Sbjct 6974 TTGGTACCAAACCATT-GCTAGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGA 6916 Query 48465 ATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTA 48524 || ||| || | |||||| |||||||| || | || || || || || || |||| Sbjct 6915 ATTTTATGAACGGCAATACCAATACCACCAGCACTCTTTGAGATGAGTGCGCATTGTTTC 6856 Query 48525 AGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGAC 48584 | |||||| || || || || || ||| ||| |||| | | || |||||| |||| Sbjct 6855 AAGGTATCGTAGATACCATCGATTGAATCCTCTTTCATTTGAACTAAGAAACAAGAAGAC 6796 Query 48585 ATTTGCGGATGACAA-GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTT 48643 ||||| || ||| || |||| ||| ||||| ||||| | |||||| | || |||| Sbjct 6795 ATTTGTGG-TGATGGTGTACCTGCATTGAATAAGGTTGGTGTGGCATGAGTGAATAATTT 6737 Query 48644 CTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTAT 48703 ||||||||| ||| ||||| | ||| ||||||| || || ||| ||||| || Sbjct 6736 CTCTGATAAACGTTTGTATGTGTTGATAGCAGAATCAATGTCTTCGCCATGGATACCAAT 6677 Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAG 48763 || |||||||| ||||| | ||| || | ||| || |||||| | || ||| Sbjct 6676 TGAAACACGCATCAACATGTGTTGTGGACGTTCGACGATTTTGCCACCAATACGATGAAG 6617 Query 48764 ATATGATTTTTCCAATGTTTTAAAACCAAA 48793 ||| || |||||||||||| || ||||| Sbjct 6616 ATAGGAACGTTCCAATGTTTTGAATCCAAA 6587 Score = 118 bits (130), Expect = 1e-21 Identities = 352/542 (65%), Gaps = 10/542 (2%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 || || | ||| ||||||||||||||||||||| |||||| |||||||||||| Sbjct 8403 GTACGGAGATAGTACATACCAGTCTTTAAACCTTTCCTCCATGAGTAGAAATGCATAGAG 8344 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 || | ||| | | | | ||||||| ||| || ||| | | ||| || ||||| || Sbjct 8343 GTGAGTTTGGCAAAGGTTGGTTCTGCAATGAAAACATTGAAACTTTGGCTTTGATCGATG 8284 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 || ||||| | |||||| |||||||| | | | ||||| | || ||||| || ||| Sbjct 8283 AAAGCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGACGAATTTCCCAAACAGTT 8224 Query 47193 TTATAAATTTGTTTAATGTCTTCTGGGA---GATTAGTATTTTGAATAGATCCTCCgttt 47249 ||||| | || ||| | || || |||| | | | |||||| || || | | Sbjct 8223 TTATAGAGTTCTTTCAATTCATCAGGGATGCCACCAATGGATTGAATGGAACCACGTGCT 8164 Query 47250 tctataattttgttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaA 47309 | || |||| ||| || | || || ||||| || | | | || Sbjct 8163 GCAATGATTTGGTTCTTCATCTCTGGTGTCCAAATACCCAACTCCATGAGATCCTCTAGT 8104 Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369 | || ||| |||||| ||||| |||| || || | ||| || || ||||| Sbjct 8103 AATTGTTTATTGACAATTGTGAATTCACCAGCTAAAACACGACGACTGTAAATATTTGAA 8044 Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATG 47429 || |||||||| | | ||||||| || |||| |||||| ||||| || || ||||| Sbjct 8043 GTGTATGGTTCAAAACATTCATTGTTACCAAGGATTTGACTTGTTGAAGCGGTTGGCATT 7984 Query 47430 GATGCAACTAATAAGCTATTTCTTACTCCATATTT-TTG--TATCTNNNNNNNNNNNNGT 47486 | ||||| ||| | || | || ||| ||| ||| |||| | Sbjct 7983 GGTGCAATTAAGAGTGAGTTACGTAAACCACCTTTATTGACGATCTTATCCTTTAATTCT 7924 Query 47487 TTCCAATCCCAA--AGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTT 47544 |||||| |||| || || ||| ||||||||| | |||||||||||| || |||| Sbjct 7923 GTCCAATTCCAACGTGAACT--TGGTGTAACATTCCACATATCATATTGAAGGATACCTT 7866 Query 47545 TA 47546 || Sbjct 7865 TA 7864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 48933 GTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGA 48992 |||| |||||||||||| |||| | || | || ||||| ||| |||||||||||||| Sbjct 6420 GTTTGTTTATGAAGATTGGATACACTGATACGTGCTGCTAAAATACCATAATCTGGATGA 6361 Query 48993 ATTGTTGTACATGTA--CTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTA 49050 ||||| |||| || || | | | || ||||| || |||| |||||| | || ||| Sbjct 6360 CGTGTTG-ACATATATGCT-GCTGTCTCGGCTGCCAAATTATCCAATTCTGTTGTCTTTA 6303 Query 49051 CACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTTACTGGATC 49099 |||||| | | | ||| || ||| || ||||| | |||||||| Sbjct 6302 CACCTGGAAACACTCCACTAACAACCTTTTGTGCTACTTCAACTGGATC 6254 >seq58 Length=51432 Score = 93.3 bits (102), Expect = 5e-14 Identities = 194/284 (68%), Gaps = 10/284 (4%) Strand=Plus/Plus Query 65854 GTAATAGGAATAGATGAAGGCCAATTCTTTCAAGATATTGTAGAGTTTTGTGAAAATATG 65913 ||||| || || |||||||| ||||| || | ||| ||||| | ||| ||||| || | Sbjct 12862 GTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGATTTA 12921 Query 65914 GCAAATAAAGGAAAAATAGTGATAGTTGCAGCATTGGATGGAACATTTAAAAGAAAACCT 65973 |||||| |||| |||| || || |||| ||| | ||||| ||||| |||||||||| Sbjct 12922 GCAAATCAAGGTAAAACCGTTATTATTGCTGCACTCGATGGTACATTCCAAAGAAAACCA 12981 Query 65974 TTTGGTAAT--GTATTAAATTTAATTCCATTATCTGAAACAGTAACAAAACTTACAGCTG 66031 || ||| || | ||||| | || ||||| | ||||| | || || | Sbjct 12982 TTCC--AATCAGTCATTGATTTAGTCTCAAAGGCTGAATATATTACAAAGTTGACCGCCG 13039 Query 66032 TGTGTATGAAATGTTTTAAAGATGCATCTTTTTCAAAACGTATAGGTACAGAAACAGA-G 66090 | |||||| || | || || || | |||||||||||||| | | |||| || | Sbjct 13040 TTTGTATGGTTTGCTACAATGAGGCCGCCTTTTCAAAACGTATCGTT---GAAAGTGATG 13096 Query 66091 ATA--GAAATTATAGGCGGTAAAGATAAATATCTATCTGTATGT 66132 ||| ||| | || || |||| || || || | ||||| ||| Sbjct 13097 ATATCGAATTGATTGGTGGTATTGACAAGTACATCTCTGTTTGT 13140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562096349290080