Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq3 165 2e-35 seq958 104 5e-17 >seq3 Length=104280 Score = 165 bits (182), Expect = 2e-35 Identities = 335/488 (69%), Gaps = 17/488 (3%) Strand=Plus/Minus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGAT 150366 |||||||||| | |||||| |||||||| | || |||| || | | | ||| ||| Sbjct 17391 AGAAGGTAAATTAGATCCAGTAATTGGTAGAGATGATGAAATTCGTCGTGTCATT-AGAG 17333 Query 150367 T-CTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAA 150425 | || || | | ||| ||||| ||| | || |||||||||| |||||||| |||| Sbjct 17332 TACTCTCAAGAAGAACTAAAAACAATCCAGTATTGATTGGTGAACCTGGTGTTGGAAAAA 17273 Query 150426 CACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGA 150485 | | |||| || || ||||||||||| || | | ||||||| |||| ||| | | | Sbjct 17272 CTGCAGTCGTAGAAGGTTTAGCACAACGTATTGTTCGTGGTGATATTCCTGATAATTTAA 17213 Query 150486 AAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTG 150545 | | || || | | ||| ||||||||||||| | ||| ||| |||| ||||||| Sbjct 17212 ATGCACGTG---TTATCGCATTGGATATGGGTGCATTGATTGCAGGTGCTAAATATCGTG 17156 Query 150546 GTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATGATG--- 150602 |||| || ||||| ||| || | | | || ||||| | || || ||| || Sbjct 17155 GTGATTTTGAAGAGCGTTTAAAAGCTGTACTCAAAGAAGTTAAGGATTCAAATGGTGGCA 17096 Query 150603 TTATTCTGTTCATCGATGAAATCCA--TACTATTATGGGTGCTGGTGCGACTGGCGGCGG 150660 | || || ||||| |||||||| || | ||||| ||||||||| ||| | || Sbjct 17095 TCATCCTATTCATTGATGAAATTCATTTGGTATTA--GGTGCTGGTAAAACT---GATGG 17041 Query 150661 TTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCA 150719 | | ||||| ||| || |||| || || | | | |||||| ||||| | Sbjct 17040 TGCAATGGAT-GCAGCAAACTTGTTGAAGCCAATGTTGGCAAGAGGTGAACTTCGTTGTA 16982 Query 150720 TCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGC 150779 | ||||| ||||| | |||||||||||| || || |||| || ||| ||||| | | | Sbjct 16981 TTGGTGCCACAACATTGGATGAATATCGTCAATACGTTGAGAAGGATCCAGCATTTGAAC 16922 Query 150780 GTCGTTTC 150787 |||||||| Sbjct 16921 GTCGTTTC 16914 >seq958 Length=8249 Score = 104 bits (114), Expect = 5e-17 Identities = 131/179 (73%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 150311 GGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTTGATGATCTAATTCAGATTCTT 150370 |||||| | |||||| |||||||| | || ||| || | | |||||| | | Sbjct 2479 GGTAAATTAGATCCAGTAATTGGTAGAGATGAAGAAATTCGTCGTACAATTCAAGTATTA 2538 Query 150371 TCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAA 150430 | | | ||| ||||| ||| | |||| |||||||||||||||||||||||||| Sbjct 2539 AGTAGAAGAACTAAAAACAATCCAGTGTTAATTGGTGAACCAGGTGTTGGTAAAACAGCG 2598 Query 150431 ATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGA 150489 || ||||| |||||||||||| | || ||||||||||| |||||| ||| ||||| Sbjct 2599 ATTGTTGAAGGATTAGCACAAAGAATTATCAATGGTGATGTACCAGATAGTAT-AAAGA 2656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147564345394456