Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq722 96.9 4e-15 seq1 86.0 7e-12 >seq722 Length=14880 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 66844 TTATTTGTAGGCATCCATCGTGCCAGTTTTAAATACATTAATTACTCGTTTAGCACGATT 66903 ||| || |||||||| | || ||||||||||||||| | ||||||| || | |||||| Sbjct 5765 TTAATTATAGGCATCAAGTGTACCAGTTTTAAATACACTGATTACTCTGTTTGAACGATT 5824 Query 66904 TGGTGTCTGTTTAAACCATTTAGA-TTGGGCAAGGTTCAA-AGCAGCTTGGTCCCACTGT 66961 ||| || || ||| ||| ||| || ||| ||||| || || | ||||||| Sbjct 5825 TGGAGTTTGCTTATTCCAAGAAGAGTTTTTCAA--TTCAACAGATGCATCTTCCCACTTC 5882 Query 66962 TTTGCTTTAAGTAGTTTAATAGAGTTATTAAATCCAGCAACGCCAGCAACACCCATTTGG 67021 ||| ||| || || ||||| || || |||||| | ||| ||| |||| | ||| Sbjct 5883 TTTTCTTCAATTAATTTAAGGGATTTTTTAAATTTTGAAACACCATTTTCACCTAATTGA 5942 Query 67022 AATACCATATTCACTAAAGCCATTTGTCTTATAGGGTCTAA 67062 || |||||||| || |||||||| | |||| ||||| Sbjct 5943 AAAACCATATTTGTCAATGCCATTTGACGAATAGAATCTAA 5983 >seq1 Length=107950 Score = 86.0 bits (94), Expect = 7e-12 Identities = 272/410 (66%), Gaps = 15/410 (4%) Strand=Plus/Plus Query 146572 ACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGTACG 146631 || ||||| || || || |||| |||||| || || | || || ||||||| ||| Sbjct 66172 ACGCCATAGTCCAGATGACGAACACGGTTCTCCTCGATGCCGCGGTTATTCTTCAATACC 66231 Query 146632 AGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGCTGCACCGCCACGA 146691 ||||| |||| ||||| ||||||||||| || || | || ||||| || || ||| Sbjct 66232 AGCAGACTTTCAACTTCCAGATGCCAAATAGGGTAGAAAGCCGTCGCTGCGCCACCTCGA 66291 Query 146692 ATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGTTTTCCAG-AATGGAATAAC 146750 | ||| || || || || ||||| |||| | | | ||| || ||| || || || || Sbjct 66292 ACGCCACCCTGCGAGCATGATTTCACAG-CGGTCTGGAAGTGTTTCAGAAAGGGGATTAC 66350 Query 146751 GCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATACATT---CC 146807 ||| || || |||| ||| || |||| | || ||||| || | || Sbjct 66351 GCCAGTGTGGGTGGCTTCTCCATTGCGGATCTCACTCCCCAATGCACG---CAGTCGGCC 66407 Query 146808 AGCATTAACACCAATACCGGCACGTTTGCTGATA--TATTTGATGATTGCTTTGTTTACT 146865 | | || ||||| || ||||| || || | || | ||| || || | | Sbjct 66408 AAAACCAATCCCAATGCCAGCACG-ACGC-GACACGTAATCGATAATGGCAGAGGACGCA 66465 Query 146866 GCGTTAAT-ACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGAACTGGCG 146924 ||| | || || |||| ||| || | ||||| | |||||| ||||||||| Sbjct 66466 GCGCTGATCCCTTTCAA-ACTGTCTTCGGACTCAATCAGAACGCAGCTGGAGAACTGGCG 66524 Query 146925 AGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGA-AATCTGA 146973 ||||| ||||| || |||||||| ||||| || |||||||| ||| ||| Sbjct 66525 CGTCGGGGTACGGACGCCGGCCATGATTGGGGTGGGCAGAGACAATTTGA 66574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540048837653280