Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq90 127 2e-24 seq1199 113 4e-20 seq641 104 2e-17 seq102 104 2e-17 >seq90 Length=44396 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| || || ||||| ||||| ||||||||||| || |||| ||| | Sbjct 14203 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14262 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| | | | | |||| || || | || |||||||| || | || ||| Sbjct 14263 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAA-GACAAAGAAGGTATCCCACCAGA 14321 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | ||||||||||| || |||||||| |||||| | ||| | ||||||| Sbjct 14322 TCAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTA 14381 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| ||||| ||||| || || ||| | || ||||||||| |||| || || Sbjct 14382 TAACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGGTAT 14435 >seq1199 Length=11192 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| | || ||||||||||| || ||| ||| |||| Sbjct 949 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 890 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || |||| |||||| || ||||| || | || ||||||| Sbjct 889 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAA 830 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| || |||||||| |||||| | ||| | | ||||| || Sbjct 829 CAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 770 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||||||||| || || || | || ||||||||| ||||||| Sbjct 769 ATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGAGG 723 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||||||||| ||||||||||| || ||| ||| |||| Sbjct 1405 ATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACATTGGAAGTTGAAGGTTCA 1346 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | || | || || |||| || || ||||| || | || ||| || Sbjct 1345 GATAACATTGAAAATGTTAAAGCCAAAATTCAA-GATAAAGAAGGTATCCCACCAGACCA 1287 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || || || || || |||||||| |||||| | ||| | | ||||| || Sbjct 1286 ACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAA 1227 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| || || || | || ||||||||| |||| || || Sbjct 1226 TATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGTGGTAT 1176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || ||||||||||| || ||| ||| |||| Sbjct 1177 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 1118 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | || | || || |||| || || ||||| || | || ||| || Sbjct 1117 GATAACATTGAAAATGTTAAAGCCAAAATTCAA-GATAAAGAAGGTATTCCACCAGACCA 1059 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || || || || || |||||||| |||||| | ||| | | ||||| || Sbjct 1058 ACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 999 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| ||||||||||| ||||| ||| |||| | |||||| |||| || || Sbjct 998 CATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGGCAT 948 >seq641 Length=13309 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||||||||| ||||| || || || ||| ||| ||| Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCA 12911 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || | || ||| || || ||||| || | || ||||||| Sbjct 12910 GATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 12851 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || || || || ||||||||||||||| | ||| | | ||||| ||| Sbjct 12850 CAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12791 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| ||||| ||| |||| | |||||| |||| || || Sbjct 12790 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGGTAT 12741 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || |||||||||||||| |||| ||| | Sbjct 13198 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 13139 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || | ||| |||||| || ||||| || | || ||||||| Sbjct 13138 GACAACATCGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 13079 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || || || || ||||||||||||||| ||| | | |||||||| Sbjct 13078 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATAAT 13019 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| ||||| || ||||| | |||||| |||| || || Sbjct 13018 ATCCAAAAAGAATCAACTCTCCATTTGGTACTCAGATTAAGAGGTGGTAT 12969 >seq102 Length=41085 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || ||||||||||| ||| ||| ||| ||| Sbjct 389 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCT 448 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || ||||| || || |||||||| || | || ||||||| Sbjct 449 GATAATATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 508 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || || || || |||||||| |||||| ||| | | ||||| ||| Sbjct 509 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAAC 568 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| ||||| ||| |||| | |||||| |||| || || Sbjct 569 ATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGGTAT 618 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | || ||||||||| ||| | || || || || |||||||| ||| Sbjct 254 GACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA 313 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| | | ||||| || || ||||||||||| ||||| ||| | || ||| Sbjct 314 GATGGTCGTACTCTTTCTGATTACAATATCCAAAAAGAATCCACTCTTCACTTAGTTTTA 373 Query 28767 AGATTACGAGGAGGGAT 28783 |||||| |||| || || Sbjct 374 AGATTAAGAGGTGGTAT 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425395612851588