Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq1 199 4e-46 >seq1 Length=107950 Score = 199 bits (220), Expect = 4e-46 Identities = 336/479 (70%), Gaps = 12/479 (3%) Strand=Plus/Minus Query 40447 CAAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTC 40506 |||| ||||||| || || ||||| ||||| || || ||||| || |||||||||||||| Sbjct 66573 CAAATTGTCTCTGCCCACCCCAATCATGGCCGGCGTCCGTACCCCGACGCGCCAGTTCTC 66514 Query 40507 CAGTTGTGTAGTAATTGAATCGGGTGATTCTCTTG---GTTCTCTTAACGCTGTAACCTC 40563 ||| || || | ||||| || | || | ||| | || | ||||| |||| Sbjct 66513 CAGCTGCGTTCTGATTGAGTCCGAAGACAGT-TTGAAAGGGATC--AGCGCTGCGTCCTC 66457 Query 40564 TGCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCG 40623 ||| || | | || | || | |||||||| |||||| || || | | || Sbjct 66456 TGCCATTATCGATTACGTGTCGCGTCGTGCTGGCATTGGGATTGGTTTTGGCCGACTGCG 66397 Query 40624 CGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCC-TTTCT 40682 ||| |||| | | ||||| ||| ||||| || ||||| || || || ||||| Sbjct 66396 TGCATTGGGGAGTGAGATCCGCAATGGAGAAGCCACCCACACTGGCGTAATCCCCTTTCT 66337 Query 40683 GGAAACATATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTG 40742 | ||||| | || |||||||| ||||| || || |||||||||||||| ||||| || | Sbjct 66336 G-AAACACTTCCAGACCGCTGTGAAATCATGCTCGCAGGGTGGCGTTCGAGGTGGCGCAG 66278 Query 40743 CAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACA 40802 | || | || ||| | ||||||||||||||||||| || ||||| |||||||| | Sbjct 66277 CGACGGCTTTCTACCCTATTTGGCATCTGGAAGTTGAAAGTCTGCTGGTATTGAAGAATA 66218 Query 40803 ACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGT 40862 || ||| | || || ||||| ||||||||||| || ||||| ||| | | |||| Sbjct 66217 ACCGCGGCATCGAGGAGAACCGTGTTCGTCATCTGGACTATGGCGTAATGATCAACCGCC 66158 Query 40863 TGATGTATAAACGCTT--AATGAATCGTGATTACATTACGCTGTTTAGTCCGGATGTTG 40919 |||||||| ||| | | | | || || | ||||||||||| || ||| ||| || Sbjct 66157 TGATGTATCGCCGCCTGGTACGCAACGAGA--ATATTACGCTGTTCAGCCCGCATGATG 66101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557981240441760