Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 >seq1 Length=107950 Score = 134 bits (148), Expect = 1e-26 Identities = 214/301 (71%), Gaps = 7/301 (2%) Strand=Plus/Plus Query 76460 GAACGCCCAAGTCTCTACCCATGTTTCCAGGG-TGGTGTCGGATACGATCGGCAGAAGAA 76518 ||||| ||| || || ||||| ||||| || ||| | | | | | |||||| || Sbjct 64406 GAACGACCATGTTTCCACCCACGTTTCGAGCTCTGGAATTGAA-ATAAGCGGCAGCAGCG 64464 Query 76519 CTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGA 76578 |||||| || | || ||||| || |||||||| || ||||||| |||||||| | Sbjct 64465 TTGCGTTTGGGCTGCGTCCCTGAACGGAATCCAGCAGAGTCTGGTAACGGAGGTTGCTCA 64524 Query 76579 TGAAGATGTGCTTCTCGTGATCCGGCAGGTTCATGTAG---TCGATTCGGTCACGGGTCA 76635 ||| |||||| ||| || || |||| || | | | ||||| || || ||| | Sbjct 64525 GGAAAATGTGCCGCTCATGCTCTTGCAGCTTAGTATTGAAATCGATGCGATCGGTGGTTA 64584 Query 76636 CGTTAACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAACT 76695 || |||||||| || ||||||||||| | || || ||||| |||||||| ||||| Sbjct 64585 TGTCGACTTCTTCCGGGCGCCAGAAGAAGGAGAGCTGTTTTTCGATCAGCTTTTCGAA-A 64643 Query 76696 TCGC-ATGTTTCTGCTGGTCGTAGCGAGAAACGTTCGGTGTCTCTCCGAGGAACATCGGC 76754 |||| | |||||||| |||||||| | |||||| | || ||||||||||| ||| Sbjct 64644 TCGCGGTACTTCTGCTGATCGTAGCGCGCAACGTTGACAGACTGCCCGAGGAACATAGGC 64703 Query 76755 T 76755 | Sbjct 64704 T 64704 Score = 123 bits (136), Expect = 2e-23 Identities = 210/300 (70%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 77618 AGCTTGGTCGATGAACTTTTGCATGATCGCTACGAGGGTCAGGTACGGAATCGGTGAAGC 77677 ||| ||||| | |||||| || |||||||| || |||||| || | |||| | | Sbjct 65100 AGCCTGGTCAAAGAACTTCTGAATGATCGCAACTTTGGTCAGATA--GCCGCGGTTATCC 65157 Query 77678 --CATATCCCACTTGTACTCGTAAACCACGCTCGGGTCACCAACGCCCGGCACCAACACT 77735 ||||||||| ||||||||| | || | ||| ||| | |||| |||| || | Sbjct 65158 GGCATATCCCAAAGGTACTCGTACTGATCTTTCAGCTCAGCAAAGTCCGGAACCACCATT 65217 Query 77736 GGCAGCATCCCAGCAGCGGATTTCTTGAAGGAAATCGCATCACGAGGGGGCTCGAATCCG 77795 || || || | |||| || | ||||| | | |||| || || |||| || Sbjct 65218 TTCACAATGCCGTCTTTGGATGATTTCACGGAAACAGGACCACGCGGCGGTTCGATACCA 65277 Query 77796 TTGGTGGAGTTGGTGATTTGGCTGGATGTCTCGCAAGGCATCATCGTGGACAGCGTGGAG 77855 || ||||||||||||||||||||||| || ||||| |||||| | | ||| || ||| Sbjct 65278 TTTGTGGAGTTGGTGATTTGGCTGGACGTTTCGCACGGCATCTGAGCTGTCAGGGTAGAG 65337 Query 77856 TTACGCAGGCCATGAATGGCG-ATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTC 77914 |||||||| |||| | | ||| ||| | ||||||| ||||||| ||| ||||| || Sbjct 65338 TTACGCAGACCAT-ATTCGCGTATGCGGTCGCGCAGCTCTTCCCAAGGCATTTTCAGCTC 65396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455378713138080