Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq319 282 5e-71 seq642 100 3e-16 seq174 93.3 5e-14 seq1107 84.2 3e-11 >seq319 Length=25483 Score = 282 bits (312), Expect = 5e-71 Identities = 1185/1841 (64%), Gaps = 60/1841 (3%) Strand=Plus/Plus Query 75137 GATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGC 75196 |||| || || |||||| ||||||| | || ||||||||| || | | |||| Sbjct 6575 GATTATGATTTCTTTGGATTCAAAACATTGGAACGTTCCTATCTTCATCGTATTGGTGGC 6634 Query 75197 ATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAA 75256 | || | ||| ||||| ||||||| ||||| || |||| || ||||| || ||| Sbjct 6635 AAAATCGTCGAACGTCCACAACACATGTTGATGCGTGTTTCAATTGGTATCCATGGCGAA 6694 Query 75257 GACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTA-TGTTCATTCACGC 75315 ||||||||||||| | | |||||| | | | | | || | | |||| ||| || Sbjct 6695 GACATTGATTCTGCTATCAACACATAC-AAACGTTTATCAGAGAAATTATTCACTCATGC 6753 Query 75316 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTAT 75375 ||||||||| | |||||||| ||||||||| ||| || ||||| ||| || |||| Sbjct 6754 CACACCAACCTTATTCAATGCAGGTACACCATCACCACAAATGTCTTCTTG-TTTCTTAG 6812 Query 75376 CGCCAA-CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAA 75434 | || || ||||| |||||| | |||||||| | || | | | || || | | Sbjct 6813 TTCAAATGAAAGAGGATTCAATCGATGGTATCTACGATACCTTGAAACAATGCGCACTCA 6872 Query 75435 TCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTC 75494 |||||||| | ||||| |||||||| || | | ||| | | | || | || | Sbjct 6873 TCTCAAAGAGTGCTGGTGGTATTGGTATTGCCGTTCATAAAATTCGTGCTGCTCAAAGTT 6932 Query 75495 GTATTCGGGGGACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAAC 75553 |||||| || || |||||| | | || ||||| | | ||||||||||| || || || Sbjct 6933 ATATTCGTGGTACCAATGGTACTAGCA-ATGGTTTGGTACCAATGCTTCGTGTTTTCAAT 6991 Query 75554 GCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTA 75609 | || || || || || |||||| | || | | | || || || | || || || Sbjct 6992 GATACTGCTCGTTACGTCGATCAAG-GTGGTGGCAAGAGAAAAGGTGCCTTTGCCGTTTA 7050 Query 75610 CTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAACCAAGGTG 75668 |||||| |||||||| |||||| || | || ||| |||| | | || ||| ||| Sbjct 7051 CTTGGAGCCATGGCACGCCGATGTCTTTGAATTCATTGATCTCAAGA-AAAACACTGGTA 7109 Query 75669 ACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGA 75728 | || ||| | |||||| || || | |||| ||| | || | || ||| Sbjct 7110 AAGAGGAGATGAGAGCTAGAGACCTTTTCTATGCCCTTTGGGTCAGTGATATCTTTATGG 7169 Query 75729 AGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCT 75788 |||| || || | |||| | ||| |||| || |||||| || | ||||||||||| Sbjct 7170 AGCGTGTCGAACAAAATGGTGATTGGGCTCTCTTTTGTCCAAACGAAGCACCAGGTCTTG 7229 Query 75789 CCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAG----AGGAGG-G 75843 | || | ||| | | || |||||| || ||||||| | ||| Sbjct 7230 CTGAAACTCACTCTGAACAACATCGTGCTCTCTACTTGAAATATGAAGCCACACCAGGCC 7289 Query 75844 TAGAGCCAATGCG-ACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGA 75902 || |||| || | | ||| ||| ||||| || ||| | |||| || Sbjct 7290 TA---CCAAGACGTATAATTAAAGCTCAAGATCTTTGGTTCGCCATTATGGAATCTCAAG 7346 Query 75903 CGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAA 75962 || ||||| ||||||| || | || ||||||||||| || || || |||| Sbjct 7347 TTGAAACTGGTACACCATTCATCTTGTATAAGGATGCTTGCAATGCCAAATCCAATCAAA 7406 Query 75963 AGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATA 76022 ||||||| || || || | || |||||||| || ||||| | | || ||| Sbjct 7407 AGAATTTAGGTACCATTAGTAGTAGTAATCTTTGTACAGAAATCATTCAATATACATCAC 7466 Query 76023 AGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT--AT--GTCAAT 76078 ||||| | || ||||| ||| | || || ||||| |||||||| | || ||||| Sbjct 7467 CAGATGAAATTGCCGTTTGTAATCTCGCCTCTATCGCACTTCCAAAATTCATTCGTCAAA 7526 Query 76079 GAAGAGACTC--GCACT---------TTTGATTATGA--AAAACTTC----ATGAAATCA 76121 | || || || | ||||| | ||| | | ||| |||||||| Sbjct 7527 AAGCAGGTTCAACCAATCCAAAAGAGTTTGAATTTGACCATCAATTCCTCTTTGAAATCA 7586 Query 76122 CAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTT---G 76178 | || | | || |||||| || ||||||| | || | |||||| ||| | Sbjct 7587 CCAAATTAATCACAGTAAATCTTAATGTTATCATTGATCGTAACTATTATCCAGTTATCG 7646 Query 76179 AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCG 76238 || || || || ||| | |||| | || |||||| | ||| |||||||| | | Sbjct 7647 AG---GCTAAAACCTCAAATCTTAGACATCGTCCAATTGGTATTGGTATTCAAGGTTTAG 7703 Query 76239 CGGATGTATTTATTTTGTGCCGCTACGCATTT-GATTCAGATGAAGCCAAGGAGATGAAT 76297 | ||||| || ||| || || || ||| ||| | || || | | ||| Sbjct 7704 CAGATGTTTTCATTAAAATGCG-TATGCCTTTCGATAGTGTTGCCGCTGCCAAATTAAAT 7762 Query 76298 GCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAA 76357 | | ||| ||||||||| ||| ||| | | || | ||||||||| | Sbjct 7763 GTTGAAATCGCTGAAACCATTTATTTCGCTGCTTTAACAGCCTCTCATGAATTGGCCGTT 7822 Query 76358 GCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTT 76417 | ||| | ||||| | || | || || || || || |||| | ||||| | | Sbjct 7823 CGTGATGGTCCTTATGAATCTTTCCAAGGCTCACCAGCTTCTAAAGGTATCCTTCAATAT 7882 Query 76418 GATATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGA-TGTTCTCAAGGA-ACG-- 76473 ||||||| |||| || | |||||| ||| | || | ||| | | ||||| | | Sbjct 7883 GATATGT-GGAATGTTACACCAAGTTCACGTTGGAATTGGACAGAATTAAAGGATAAGAT 7941 Query 76474 CATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCAC 76533 | |||| | ||| | |||||| || || || |||||||||||||| || || || Sbjct 7942 CGTCAATAAAGGTGGTTTACGTAACTCACTCTTAATTGCACCAATGCCAACCGCTTCAAC 8001 Query 76534 CGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAG 76593 |||||| | ||||| |||||||| |||||||||||||| |||| || ||| | Sbjct 8002 AAGTCAAATCCTTGGTAACAATGAATGTTTTGAACCATACACTTCAAATATTTACAGTCG 8061 Query 76594 AAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAA 76653 | | || ||||| || |||||||| || || | | | || |||| | | Sbjct 8062 TCGTGTTTTAGCTGGTGAATTCACAATTGTCAATAAACAATTACTAGAGGATCTCATGGA 8121 Query 76654 GATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCA 76713 | | ||| | ||| | || |||||| | | || | ||| ||||||||||||| Sbjct 8122 GTTGGGTATTTGGACACCAGAGATGAAGAACCAAATCATTGCAGCACGTGGTTCCATTCA 8181 Query 76714 AAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAA 76773 | || | ||||| ||||| | || | ||||| || || |||||||| Sbjct 8182 ATCCATTGGTGGCATCCCTGATGAATTGAAAGAACTCTATAAAACTGTTTGGGAAAT--T 8239 Query 76774 GATGAAAGA--TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 76831 | ||||| | ||||||| |||||||| ||||||||| ||||| |||||||| ||| Sbjct 8240 CGTCAAAGAACTCTCATTGATATGGCCGCTGATCGTGGTGCTTTCATCGATCAAAGCCAA 8299 Query 76832 AGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTAC 76891 ||| | ||| | ||||| | | ||||| | |||| ||| | ||||||||| | ||| Sbjct 8300 AGTTTCAATGTTTTCATTGCAGAACCAACCTTTGCCAAACTCACCTCTATGCATTTCTAC 8359 Query 76892 GCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 | |||| | || | || || || |||||||||||||| Sbjct 8360 TCATGGAGGAAAGGTTTAAAGACTGGTATGTACTATCTCCG 8400 >seq642 Length=17076 Score = 100 bits (110), Expect = 3e-16 Identities = 217/325 (67%), Gaps = 10/325 (3%) Strand=Plus/Minus Query 175186 TTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTT 175245 || |||||||| | || ||| | || |||| ||| ||||||| |||| | ||| Sbjct 11381 TTTAGTGATGTAGCAGGTCTTGGTGAAGCTAAAGTTGAGATTGAAGAATTTGTAAACTTT 11322 Query 175246 CTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTC 175305 | ||| | || ||| || || | |||||| ||||| || |||| || || | Sbjct 11321 TTAAAGAATCCAAAGAAATTCCATGACATTGGTGCAAAGATACCAAGAGGTGCAATTTTA 11262 Query 175306 GCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAAT 175365 | || |||||||| || || || | | || ||||| || ||||| ||||| Sbjct 11261 GTAGGACCACCAGGTACTGGTAAAACATTGATTGCTAAAGCCACAGCTGGTGAGGCAAAT 11202 Query 175366 GTCCCATTC-----ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGG 175420 || |||||| | |||||| | || | || || ||||||||||||||||| | Sbjct 11201 GTACCATTCTATTCAACCAGTGGTT-----CAGATTTCGTAGAGATGTTTGTTGGTGTTG 11147 Query 175421 GTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCT 175480 || | | | ||| | ||| | |||||| || | | ||| |||||||||||| | Sbjct 11146 GTCCATCACGTGTTAGAGATTTATTTGAACAAGCTAGAAAGAATGCACCATGTATTGTAT 11087 Query 175481 TCATTGATGAGATTGATGCGGTGGG 175505 |||||||||| || ||||| || || Sbjct 11086 TCATTGATGAAATCGATGCTGTTGG 11062 >seq174 Length=33651 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/189 (72%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA 175461 || |||||||||||||| ||| | | ||| | ||||||||| || || || | | Sbjct 12817 GAAATGTTTGTTGGTGTTGGTCCATCTCGTGTTAGAGATCTCTTTAAAGAAGCACGTGCA 12758 Query 175462 AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCA-AGCAACGCAGCGC 175520 ||| ||| || ||||| ||||||||||| || ||||| || || | ||||| || Sbjct 12757 AATACACCTTGCATTGTATTCATTGATGAAATCGATGCTGTTGGTAGAGCAAGATCACG- 12699 Query 175521 TGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGAT 175580 ||||||| | ||| ||||| |||||||| | ||| | |||||| || | |||||| Sbjct 12698 TGGTGGT-TTCCA--TAATGATGAGAGAGAGAATACATTGAATCAATTATTGGTCGAGAT 12642 Query 175581 GGATGGCTT 175589 |||||| || Sbjct 12641 GGATGGTTT 12633 >seq1107 Length=8415 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 159113 TTATAAACTTTGGAATGAGTTTCTCCGGGTATTGATTTGGACCATAAACATTATTACAGC 159172 ||||||| ||||| || | ||| || || ||||| ||||| ||||| | ||||||| | Sbjct 7243 TTATAAATTTTGGTATAATTTTTTCAGGATATTGTTTTGGGCCATATATATTATTAGCTC 7302 Query 159173 GAATTATTTTGATATTCATATCAAATGATTCTATA-TATGAACGGACTATCATTTCGGCC 159231 | ||||| | | | || | |||||||| |||| || || | |||| ||| || Sbjct 7303 TAGTTATTATTACAGGCAATTTAAATGATT-TATAATAGGATTGAACTAAATGTTCTGCA 7361 Query 159232 GCCGCTTTTGATGCTGAATATGGATTTGTTGGT 159264 | ||||| |||||||||||||||||||||| Sbjct 7362 CCTGCTTTACTTGCTGAATATGGATTTGTTGGT 7394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556385983360