Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq1 183 2e-41 >seq1 Length=107950 Score = 183 bits (202), Expect = 2e-41 Identities = 544/829 (66%), Gaps = 10/829 (1%) Strand=Plus/Minus Query 9218 TTCTATGATGCAGCGAGCACATTTGAAATCTCCCTCCCGACACCAATCATGTCTGGTGTT 9277 |||||||| | | || ||||| || | || || || || ||||||||| | || || Sbjct 66596 TTCTATGACGTCACCAGTACATTCAAATTGTCTCTGCCCACCCCAATCATGGCCGGCGTC 66537 Query 9278 CGTACACCGACCCGCCAATTCAGCTCATGCGTAAAAATCGAAAGCGGTGATAGCCTAAAA 9337 ||||| ||||| ||||| ||| | ||||| || || || || || | ||| Sbjct 66536 CGTACCCCGACGCGCCAGTTCTCCAGCTGCGTTCTGATTGAGTCCGAAGACAGTTTGAAA 66477 Query 9338 TCAATCAATGCAACATCAGGCGCAATCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGC 9397 |||| || | || || || | |||||| || | ||||| || ||||| Sbjct 66476 GGGATCAGCGCTGCGTCCTCTGCCATTATCGATTACGTGTCGCGTCGTGCTGGCATTGGG 66417 Query 9398 ATTAACGCGGGTCGTATCCGAGCATTAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACAT 9457 ||| || || | || ||||| || |||||| || ||| ||||| || Sbjct 66416 ATTGGTTTTGGCCGACTGCGTGCATTGGGGAGTGAGATCCGCAATGGAGAAGCCACCCAC 66357 Query 9458 ACTGGTTGTATCCCATTCTACAAACACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGC 9517 ||||| ||||| || ||||||||||| || || ||||||| || || || Sbjct 66356 ACTGGCGTAATCCCCTTTCTGAAACACTTCCAGACCGCTGTGAAATCATGCTCGCAGGGT 66297 Query 9518 GGTGTTCGTGGCGGCGCGGCAACGGTATTCTACCCAATGTGGCACCTAG-AGTACAAATC 9576 || ||||| || ||||| || |||| |||||||| || ||||| || | ||| ||| Sbjct 66296 GGCGTTCGAGGTGGCGCAGCGACGGCTTTCTACCCTATTTGGCATCTGGAAGTTGAAA-G 66238 Query 9577 ACTAATCGTACTCAAGAACAACCGTGGTATCGAAGAAAACCGTGTACGTCATATGGACTA 9636 || | ||| | ||||| ||||| || ||||| || |||||||| |||||| ||||||| Sbjct 66237 TCTGCTGGTATTGAAGAATAACCGCGGCATCGAGGAGAACCGTGTTCGTCATCTGGACTA 66178 Query 9637 CGGTGTACAAATTAATGGCCTGATGTATAAGCGTCTGCTGTCTGGTCAGAACATCACTTT 9696 || ||| || || ||||||||||| || ||| | |||| || || | Sbjct 66177 TGGCGTAATGATCAACCGCCTGATGTATCGCCGCCTGGTACGCAACGAGAATATTACGCT 66118 Query 9697 ATTCTCACCTCATAGTGTACCGGGTCTATACGATGCATACTTCGAAGACCAAGATAAGTT 9756 ||| || ||| ||||||||| || || ||||| | ||| | || || || || || Sbjct 66117 GTTCAGCCCGCATGATGTACCGGGGCTCTATGATGCTTTCTTTGTTGATCAGGACAAATT 66058 Query 9757 CG-AGCGACTGTACACCAAAGCGGAATCTGAT-CCATCAATCGAAAAAGACACAATCTCT 9814 || |||| |||||| || ||| ||||| | || ||| || | | | || | Sbjct 66057 CGAAGCG-CTGTACCTGCAATATGAAGCTGATGAGAGCATTCGCAAGAAATCCGTTC-CC 66000 Query 9815 GCTAAGGAAGCATTCAGCATACTAATGCAAGAGCGTGCTTCTACAGGTCGCATCTACATT 9874 ||| || ||| | || ||||| || || || ||||| || ||| | || ||| Sbjct 65999 GCTGTTGATCTGTTCTCAACCCTGATGCAGGAACGAGCCTCTACCGGCCGCGTGTATATT 65940 Query 9875 CAGCACGTAGATCACTGTAACATTAACGGTCCTTTCGATGAGCGCGTTGCACCAGTACGC 9934 | |||| || ||| ||| |||| | |||||| | || || ||||| | | Sbjct 65939 GCGAACGTTGACCACATGAACGAACACGGCGCCTTCGATCCGAAAGTCGCTCCAGTTCAC 65880 Query 9935 CAATCAAACCTATGTATGGAAATCGCACTACCAACCAAACCGTTG--AATAACGTCGATG 9992 || |||||| |||| ||||| || | || ||||| |||||| || | || ||||| Sbjct 65879 CAGTCAAACTTATGCATGGAGATTACGCTGCCAACTAAACCGCTGGCGTTTAC--CGATG 65822 Query 9993 ATCCTGATGGTGAAGTTGCGCTATGTACTCTATCTGCATTCAACTTGGG 10041 | | |||||||| | || || || || || ||||| || || |||| Sbjct 65821 ACGCCGATGGTGAGATCGCCCTTTGCACGCTGTCTGCCTTTAATCTGGG 65773 Score = 105 bits (116), Expect = 5e-18 Identities = 256/388 (66%), Gaps = 0/388 (0%) Strand=Plus/Minus Query 10458 ATGGCCTACGTAACTCTACTCTATCTGCATTCATGCCTTCGGAAACATCTTCTCAGGTAT 10517 |||| || ||||||||||| || | || ||||| | ||||| || || | Sbjct 65350 ATGGTCTGCGTAACTCTACCCTGACAGCTCAGATGCCGTGCGAAACGTCCAGCCAAATCA 65291 Query 10518 CTAACGCAACAAACGGCATCGAACCACCTCGTGGCTACATGTCAGTTAAGCAGTCGAAGG 10577 | ||| | ||||| || |||||||| || ||||| | || || || || || | Sbjct 65290 CCAACTCCACAAATGGTATCGAACCGCCGCGTGGTCCTGTTTCCGTGAAATCATCCAAAG 65231 Query 10578 ATGGCATCTTAAAACAAATCGTACCGGGTTATGATAAATACAAAGACCAATACGAGTTAC 10637 | ||||| | ||| | || |||| | || | | ||||| || ||||||| | Sbjct 65230 ACGGCATTGTGAAAATGGTGGTTCCGGACTTTGCTGAGCTGAAAGATCAGTACGAGTACC 65171 Query 10638 TATGGAATATCAAAGACAACACTGGTTACTTGGAATTGGTTGCCATCATGCAGAAGTTTG 10697 | ||| |||| || ||| || || || ||||| ||||| |||||||| Sbjct 65170 TTTGGGATATGCCGGATAACCGCGGCTATCTGACCAAAGTTGCGATCATTCAGAAGTTCT 65111 Query 10698 TGGATCAGGCTATTTCAGCAAACACTAACTACGACCCAGAAAACTACCCAGAAAGTAAGG 10757 | || |||||||||||||| ||||| ||||| ||||| || ||| | |||| Sbjct 65110 TTGACCAGGCTATTTCAGCCAACACCAACTATGACCCTACTCGCTTCCCGGGCGACAAGG 65051 Query 10758 TTCCAATCAAAAAGTTATTGCAAGATTTGGTGACATGTTATAGACTCGGCATCAAGACAC 10817 ||||||| | ||||| | ||||| || | |||| | ||| | ||||| | Sbjct 65050 TTCCAATGATGAAGTTGCTTGAAGATCTGCTCTTCGCTTATCAGCAAGGCGTGAAGACGC 64991 Query 10818 TGTACTACCACAACACACGAGATGGTGC 10845 | || ||||||||||||||||||||||| Sbjct 64990 TTTATTACCACAACACACGAGATGGTGC 64963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342965393073668