Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1199 167 4e-36 seq641 150 3e-31 seq102 141 2e-28 seq90 129 1e-24 seq23 91.5 3e-13 >seq1199 Length=11192 Score = 167 bits (184), Expect = 4e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| | || ||||| |||| | || | ||| | ||| | ||||| ||||| | Sbjct 715 TTTAATTTCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGT 774 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 | || ||||| || | | ||| ||||||||||| || |||||||||||||| ||||||| Sbjct 775 AATCTGATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGAT 834 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | || || || |||||||||||||| ||||||| ||| | |||| ||| |||| ||| Sbjct 835 CTGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATGTTATCTGAAC 894 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||| || || |||||||| || || ||||||||||| |||||||| Sbjct 895 CTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 Score = 150 bits (166), Expect = 3e-31 Identities = 195/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| |||| | || | ||| | ||| | ||||| ||||| Sbjct 1170 ATTTGCATACCACCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTG 1229 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || ||||| || | | ||| ||||||||||| || || ||||| | | ||||| Sbjct 1230 TAATCTGATAAAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGG 1289 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||||||||| ||||||| ||| | |||| ||| |||| ||| Sbjct 1290 TCTGGTGGGATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAA 1349 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 |||||||| | || || |||||||| |||| ||||| ||||| |||||||| | Sbjct 1350 CCTTCAACTTCCAATGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATAATG 1409 Query 193365 TTAGTAAAATAATTATTTTAAATAATA 193391 || |||||| ||| | |||||||| Sbjct 1410 TT-TTAAAAT-ATTGATAGAAATAATA 1434 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| |||| || |||| || | || | ||||| || || Sbjct 942 ATTTGCATGCCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTG 1001 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | | ||| ||||||||||| || || ||||| | | ||||| Sbjct 1002 TAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGG 1061 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||||||||| ||||||| ||| | |||| ||| |||| ||| Sbjct 1062 TCTGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAA 1121 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||| || || |||||||| || || ||||| ||||| |||||||| Sbjct 1122 CCTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 >seq641 Length=13309 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| |||| || |||| || | || | || || ||| || Sbjct 12735 ATTTGCATACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTG 12794 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | | ||| || |||||||| || || ||||| ||||| |||||| Sbjct 12795 TAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGA 12854 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||||||||| || || ||||| | |||| |||| |||| || Sbjct 12855 TCTGGTGGAATACCTTCTTTATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAG 12914 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| ||||| ||||| ||||| |||| ||||| ||||| |||||||| Sbjct 12915 CTTTCAACTTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| |||| ||||||| ||| | || | ||||| |||||| Sbjct 12963 ATTTGCATACCACCTCTTAATCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTA 13022 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | ||| || |||||||| || || ||||| | | |||||| Sbjct 13023 TAATCAGAGAGAGTACGGCCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGA 13082 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||||||||| ||||| | |||| |||| || | || | Sbjct 13083 TCTGGAGGAATACCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTCACTA 13142 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || |||||||| || || ||||| ||||| |||||||| Sbjct 13143 CCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || |||||||| || || ||||| | | |||||||| || || || |||||||| Sbjct 12587 ATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTT 12646 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || |||| ||| | ||| ||| |||| | |||||||| || || || Sbjct 12647 ATCTTGGATCTTGGCTTTAACATTCTCAATGTTATCACTACCTTCAACTTCGAGTGTAAT 12706 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| ||||| |||||||| Sbjct 12707 GGTTTTACCAGTGAGGGTTTTAACAAAGATTTGCAT 12742 >seq102 Length=41085 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| |||| || |||| || | || | ||||| || || Sbjct 624 ATTTGCATACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTG 565 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | ||| ||||||||||| || || ||||||||||| |||||| Sbjct 564 TAATCAGAGAGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGA 505 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || |||| || | |||| |||| |||| ||| Sbjct 504 TCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAA 445 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| | || || |||||||| || || ||||| ||||| |||||||| Sbjct 444 CCTTCAACTTCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| |||| | || | || | || | ||||| ||||| Sbjct 396 ATTTGCATACCACCTCTTAATCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTG 337 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | | ||| ||||||||||| || || ||||||||||| |||||| Sbjct 336 TAATCAGAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGA 277 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || |||| ||| | |||| ||| |||| | Sbjct 276 TCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTA 217 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||| || ||||| || || || || ||||| ||||| |||||||| Sbjct 216 CCTTCGACCTCTAAGGTGATAGTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCAT 161 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 |||||| ||||||||||||||| || |||| || | || | ||||| || || Sbjct 853 AATTTAGTTACCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTT 794 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | | ||| ||||||||||| || || ||||| | | ||||| Sbjct 793 GTAATCAGAGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTG 734 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || |||||||| ||||| || |||| ||| | |||| ||| |||| Sbjct 733 ATCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACT 674 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || |||| || || || || || || || ||||| ||||| |||||||| Sbjct 673 ACCTTCGACCTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCAT 617 Score = 87.8 bits (96), Expect = 3e-12 Identities = 112/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| |||| || || | ||| | || | ||||| || || Sbjct 168 ATTTGCATACCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTG 109 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGC-AAAAATTAATCTCTGTTG 193243 || || || | || | ||| |||||||| || || || |||||||||||| ||||| Sbjct 108 TAATCAGAGAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTG 49 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTT 193276 ||| || || || |||||||||||||| ||||| Sbjct 48 ATCTGGTGGAATACCTTCTTTATCTTGGATTTT 16 >seq90 Length=44396 Score = 129 bits (142), Expect = 1e-24 Identities = 194/272 (71%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| |||| | || | || | || | || || || ||||| ||| Sbjct 14435 ATACCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCG 14376 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| || | | ||| ||||||||||| |||||||| || | | |||||||| || Sbjct 14375 GATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGT 14316 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || |||| ||| | ||| || | || ||| ||| Sbjct 14315 GGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCA 14256 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TTTATTAGT 193369 ||||| ||||| || |||||||| |||| ||||| || || |||||||| || || || Sbjct 14255 ACTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCATCTTGATCTGT 14196 Query 193370 AAAAT--AATTATTTTAAATAATATATACTTT 193399 | | || |||||||||| || ||| ||| Sbjct 14195 CTATTTAAAAAATTTTAAATATTA-ATATTTT 14165 >seq23 Length=58329 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 ||||||| | |||| | ||| | ||| |||||| |||||| ||||||||| || Sbjct 22167 TACCACCACGTAATCTTAATACTAAATGTAATGTACTCTCTTTTTGAATATTATAATCTT 22108 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 ||| |||||| ||| ||||||||| | || ||||| | |||||| |||||||| | Sbjct 22107 TTAATGTTCTACTATCTTCTAATTGTCTACCTGCAAATAGTAATCTTTGTTGATCTAATG 22048 Query 193252 GTATTCCTTC 193261 |||||||||| Sbjct 22047 GTATTCCTTC 22038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899634472655040