Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1199 194 2e-44 seq102 159 5e-34 seq641 154 2e-32 seq90 145 1e-29 >seq1199 Length=11192 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| ||||| || |||||||||||||||| ||| Sbjct 949 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 890 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||||| ||| ||| || ||| ||||| |||||||||||||| || || ||||| ||| Sbjct 889 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAA 830 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| ||||| || | |||||| | |||||||||||||| ||| Sbjct 829 CAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 770 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || || |||||||| |||||||||||||| || Sbjct 769 ATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGAGG 723 Score = 183 bits (202), Expect = 4e-41 Identities = 197/260 (76%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 155791 TTATTGTTTATAATAAAAATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTG 155850 ||||| ||| || || | |||| || | |||||||| ||| |||||||||| |||| Sbjct 1435 TTATTATTTCTATCAATATTTTAA--AACATTATGCAAATTTTTGTTAAAACATTAACTG 1378 Query 155851 GAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAA 155910 | ||||| || ||||| ||||| |||| ||| ||||| ||| ||| || ||| |||| Sbjct 1377 GTAAAACCATCACATTGGAAGTTGAAGGTTCAGATAACATTGAAAATGTTAAAGCCAAAA 1318 Query 155911 TACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGC 155970 | |||||||||||||| || || ||||| |||||| | | |||| || ||||| || Sbjct 1317 TTCAAGATAAAGAAGGTATCCCACCAGACCAACAACGTCTCATTTTCGCTGGTAAACAAT 1258 Query 155971 TCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAG 156030 | |||||| | |||||||||||||| ||||| ||||| | || || ||||||| Sbjct 1257 TAGAAGATGGTCGTACTTTATCAGATTACAATATCCAAAAAGAATCCACACTCCATTTAG 1198 Query 156031 TGTTAAGATTAAGAGGCGGT 156050 | |||||||||||||| ||| Sbjct 1197 TTTTAAGATTAAGAGGTGGT 1178 Score = 149 bits (164), Expect = 9e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||| ||||| || |||||||||||||||| ||| Sbjct 1177 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 1118 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||||| ||| ||| || ||| ||||| |||||||||||||| || || ||||| ||| Sbjct 1117 GATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1058 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || ||||| || | |||||| | ||| | || ||||| || Sbjct 1057 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 998 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || ||||| || || | ||||||||||| || Sbjct 997 ATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 951 >seq102 Length=41085 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||| || ||||| || ||||| ||||||| | | Sbjct 161 ATGCAAATCTTTGTTAAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGT 220 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||||| ||| ||| || ||| || || ||||| |||||||| || || ||||| ||| Sbjct 221 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 280 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| || ||||| || | |||||| | ||| | || ||||| ||| Sbjct 281 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 340 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || ||||| ||||| |||||||||||||| ||| Sbjct 341 ATCCAAAAAGAATCCACTCTTCACTTAGTTTTAAGATTAAGAGGTGGT 388 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||| ||||| || || || ||||| |||| |||| Sbjct 389 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCT 448 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||||||||| ||| || || || || ||||| |||||||| || || ||||| ||| Sbjct 449 GATAATATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 508 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| || ||||| || | |||||| | | ||| | || ||||| || Sbjct 509 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAAC 568 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || ||||| || || | ||||||||||| ||| Sbjct 569 ATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGGT 616 Score = 105 bits (116), Expect = 1e-17 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT-GCCGGTAA 155965 ||||| |||||||||||||| || || ||||| ||||||||||| |||| | || ||||| Sbjct 16 AAAATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTTCGCTGGTAA 75 Query 155966 GCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCA 156025 ||| | |||||| | | ||| | || ||||| || || ||||| | || || || Sbjct 76 GCAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACTCTCCA 135 Query 156026 TTTAGTGTTAAGATTAAGAGGCGGT 156050 |||||| | ||||||||||| ||| Sbjct 136 TTTAGTTCTCAGATTAAGAGGTGGT 160 >seq641 Length=13309 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||||| ||||| || ||||| || | ||||| ||| || Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCA 12911 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||||||||| ||| || |||| || || |||||||||||||| || || ||||| ||| Sbjct 12910 GATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 12851 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || ||||| || | |||||| | ||| | || ||||| || Sbjct 12850 CAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12791 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || |||| | | || ||||| || || | ||||||||||| ||| Sbjct 12790 AT-TCAAAAGGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGGT 12743 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||| ||||| |||||| | ||||| |||| | | Sbjct 13198 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 13139 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || || || ||| || || |||||| |||||||||||||| || |||||||| ||| Sbjct 13138 GACAACATCGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 13079 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || ||||| || | |||||| | | ||| | || ||||||||| Sbjct 13078 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATAAT 13019 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || ||||| || | ||||||||||| ||| Sbjct 13018 ATCCAAAAAGAATCAACTCTCCATTTGGTACTCAGATTAAGAGGTGGT 12971 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||| ||||| |||||| | ||||| |||| | | Sbjct 12742 ATGCAAATCTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 12683 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||||| ||| || || ||| || || |||||||||||||| || || ||||| ||| Sbjct 12682 GATAACATTGAGAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAA 12623 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || ||||| || | |||||| | ||| | || ||||| || Sbjct 12622 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12563 Query 156003 AT 156004 || Sbjct 12562 AT 12561 >seq90 Length=44396 Score = 145 bits (160), Expect = 1e-29 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || ||||||| || ||||| ||||| || || | ||||| |||| | Sbjct 14203 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14262 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || || || |||||| ||| || || ||||| |||||||| || || ||||| Sbjct 14263 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 14322 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | || | ||||||||| || | |||||| | |||||||| |||||| Sbjct 14323 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 14382 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||||| || | || || || ||||| |||||||||||||| ||| Sbjct 14383 AACAT--CCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGGT 14433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731855789035200