Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1199 168 1e-36 seq641 158 2e-33 seq90 147 4e-30 seq102 136 8e-27 seq23 100 6e-16 >seq1199 Length=11192 Score = 168 bits (186), Expect = 1e-36 Identities = 188/249 (76%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 192288 TATACTTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC 192347 |||| ||||| |||||| | || ||||| | | ||| |||||||| | || | || Sbjct 705 TATATTTTTT--TTTAAT--TTCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTC 760 Query 192348 TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGAT 192407 ||| |||||| ||||| ||||| || || |||| || ||||||||||| ||||| || Sbjct 761 TTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAAT 820 Query 192408 TAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT 192467 |||||| |||||||| ||||| || |||||||||||||| ||||| ||| ||||| Sbjct 821 TAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTC 880 Query 192468 TATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 || |||||| ||| ||||||| || |||||||||||||| | ||||| | ||| Sbjct 881 AATGTTATCTGAACCTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAA 940 Query 192528 TATCTGCAT 192536 || ||||| Sbjct 941 GATTTGCAT 949 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| |||||||| | || | ||||| |||||| ||||| Sbjct 1176 ATACCACCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCT 1235 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| || |||||||||||||| || || | | ||||| || ||| Sbjct 1236 GATAAAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGT 1295 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| ||| ||||| || |||||| ||| Sbjct 1296 GGGATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCA 1355 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||||||||||||||||||||||| ||| || ||||| Sbjct 1356 ACTTCCAATGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCAT 1405 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | | || || || | ||| | ||||| ||| || |||||| Sbjct 948 ATGCCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCA 1007 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || |||||||||||||| || || | | ||||| || ||| Sbjct 1008 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGT 1067 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| ||| ||||| || |||||| ||| Sbjct 1068 GGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCG 1127 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || |||||||||||||| | ||||||| ||| || ||||| Sbjct 1128 ACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 >seq641 Length=13309 Score = 158 bits (174), Expect = 2e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATC 192365 ||||||||||| | | | || || || | ||| | | |||| || || || ||||| Sbjct 12741 ATACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTGTAATC 12799 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | || || |||| |||||||||||||| || || || ||||| |||||||| || Sbjct 12800 AGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGG 12859 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||||||||| || || |||| ||||| ||| |||||| ||| Sbjct 12860 TGGAATACCTTCTTTATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTC 12919 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || ||||||||||||||||||| ||| || ||||| Sbjct 12920 AACTTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 147 bits (162), Expect = 4e-30 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | | ||| ||||| | ||| | ||||| ||||||||||||| Sbjct 12969 ATACCACCTCTTAATCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCA 13028 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||||||||||||| || || || | | |||||||| || Sbjct 13029 GAGAGAGTACGGCCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGA 13088 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA--TT 192484 || || |||||||||||||| |||||| |||||||| || | | | || | || Sbjct 13089 GGAATACCTTCTTTATCTTGGATTTTAGCCTTTACATT--TTCGATGTTGTCACTACCTT 13146 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||||| || ||||||||||||||||| | ||||||| ||| || ||||| Sbjct 13147 CAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Score = 114 bits (126), Expect = 3e-20 Identities = 137/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || |||||||| | || || |||| |||||||||||||| || || || | | Sbjct 12561 ATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATGAGACGT 12620 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| ||||| || |||||||||||||| || || ||| ||||| || | Sbjct 12621 TGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTGGCTTTAACATTCTCAATGTTA 12680 Query 192475 TCTGACGA--TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532 || || | ||| ||||| || ||||||||||||||||| | ||||||| ||| || | Sbjct 12681 TC--ACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAGATTT 12738 Query 192533 GCAT 192536 |||| Sbjct 12739 GCAT 12742 >seq90 Length=44396 Score = 147 bits (162), Expect = 4e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 |||||||||||| | | ||| ||||| || | || | || || ||| |||||||| Sbjct 14436 AATACCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATC 14377 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||||| || || |||| || ||||||||||| |||||||| | | |||||||| || Sbjct 14376 GGATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGG 14317 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||| ||||| || || ||| || || || ||||| ||| Sbjct 14316 TGGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTC 14257 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| ||||| ||||||||||||||||| ||||||| || || ||||| || Sbjct 14256 AACTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCATCTT 14203 >seq102 Length=41085 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | | || || || | ||| | ||||| ||| || |||||| Sbjct 618 ATACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCA 559 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || |||||||||||||| || |||||||| |||||||| ||| Sbjct 558 GAGAGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGT 499 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || ||||| ||| ||| || ||| Sbjct 498 GGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCA 439 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||||||||| | ||||||| ||| || ||||| Sbjct 438 ACTTCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 Score = 134 bits (148), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | ||| ||||| || | ||| | ||||| |||||| |||||| Sbjct 390 ATACCACCTCTTAATCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCA 331 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || |||||||||||||| || |||||||| |||||||| ||| Sbjct 330 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGT 271 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA--TT 192484 || || |||||||| ||||| || || ||| ||||| || | | | || | || Sbjct 270 GGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATT--TTCAATGTTATCACTACCTT 213 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || |||| || || || || ||||| | ||||||| ||| || ||||| Sbjct 212 CGACCTCTAAGGTGATAGTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCAT 161 Score = 113 bits (124), Expect = 9e-20 Identities = 114/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | | |||||||| | ||| | ||||| ||| || |||||| Sbjct 162 ATACCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 103 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGC-AAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| || ||||| |||||||| ||| |||||||| |||||||| || Sbjct 102 GAGAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTGATCTGG 43 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTT 192452 ||| || |||||||||||||| ||||| Sbjct 42 TGGAATACCTTCTTTATCTTGGATTTT 16 Score = 100 bits (110), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||||||||| | | | || || || | ||| | ||||| ||| || ||||||| Sbjct 845 TACCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAG 786 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || || |||| || |||||||||||||| || || | | |||||||| |||| Sbjct 785 AGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTG 726 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA--TTC 192485 | || |||||||| ||||| || || ||| ||||| || | | | || | ||| Sbjct 725 GAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATT--TTCAATGTTATCACTACCTTC 668 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || ||||| || ||||| | ||||||| ||| || ||||| Sbjct 667 GACCTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCAT 617 >seq23 Length=58329 Score = 100 bits (110), Expect = 6e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||| | | | ||||||||||||||| ||| |||||| ||||||||||| Sbjct 22167 TACCACCACGTAATCTTAATACTAAATGTAATGTACTCTCTTTTTGAATATTATAATCTT 22108 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||||||| ||| || |||||| |||| ||||| | |||||| |||||||| || Sbjct 22107 TTAATGTTCTACTATCTTCTAATTGTCTACCTGCAAATAGTAATCTTTGTTGATCTAATG 22048 Query 192428 GTATTCCTTC 192437 |||||||||| Sbjct 22047 GTATTCCTTC 22038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984457648612200