Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1199 176 8e-39 seq641 154 3e-32 seq90 143 5e-29 seq102 127 4e-24 seq23 95.1 2e-14 >seq1199 Length=11192 Score = 176 bits (194), Expect = 8e-39 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| |||||||| | || | ||||| ||||| |||||| Sbjct 1176 ATACCACCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCT 1235 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | || || |||||||||||||| ||||| | | |||||||| ||| Sbjct 1236 GATAAAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGT 1295 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| || ||||||| ||| Sbjct 1296 GGGATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCA 1355 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAA 172079 ||||| | || ||||||||||||||||||||||||| || || ||||| | || ||| Sbjct 1356 ACTTCCAATGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATAATGTTTTAA 1415 Query 172080 AA 172081 || Sbjct 1416 AA 1417 Score = 165 bits (182), Expect = 1e-35 Identities = 187/249 (75%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 171821 TATACTTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTC 171880 |||| ||||| ||| || | || ||||| | || ||| |||||||| | || | || Sbjct 705 TATATTTTTT--TTTAAT--TTCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTC 760 Query 171881 TTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAAT 171940 ||| ||||| ||||||||||||| || | || || ||||||||||| |||||||| Sbjct 761 TTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAAT 820 Query 171941 TAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT 172000 |||||| ||||| || ||||| || |||||||||||||| ||||| ||| ||||| Sbjct 821 TAATCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTC 880 Query 172001 TATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 || ||||||| ||| ||||||| || |||||||||||||| | ||||| | || Sbjct 881 AATGTTATCTGAACCTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAA 940 Query 172061 TATCTGCAT 172069 || ||||| Sbjct 941 GATTTGCAT 949 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | || || || | ||| | ||||| || || ||||| Sbjct 948 ATGCCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCA 1007 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||||||||| ||||| | | |||||||| ||| Sbjct 1008 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGT 1067 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| || ||||||| ||| Sbjct 1068 GGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCG 1127 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || |||||||||||||| | ||||||| || || ||||| Sbjct 1128 ACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 >seq641 Length=13309 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || || || | ||| | || || ||| || ||||| Sbjct 12741 ATACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCA 12800 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||||||||||||| || ||||| ||||| ||||| || ||| Sbjct 12801 GAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGT 12860 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || || |||| ||||| ||| ||||||| ||| Sbjct 12861 GGAATACCTTCTTTATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCA 12920 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || ||||||||||||||||||| || || ||||| Sbjct 12921 ACTTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 134 bits (148), Expect = 2e-26 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | ||| ||||| | ||| | ||||| ||||||||||| Sbjct 12969 ATACCACCTCTTAATCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCA 13028 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||||||||||||| || ||||| | | ||||| || || Sbjct 13029 GAGAGAGTACGGCCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGA 13088 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACA--TTAGTTATAGTATCTGACGATT 172017 || || |||||||||||||| |||||| |||||| || | | | || || || || Sbjct 13089 GGAATACCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCGATGTTGTCACT-AC-CTT 13146 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||| || ||||||||||||||||| | ||||||| || || ||||| Sbjct 13147 CAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Score = 107 bits (118), Expect = 3e-18 Identities = 136/185 (74%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || | || || | || |||||||||||||| || ||||| | | Sbjct 12560 AATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATGAGACG 12619 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| || ||||| || |||||||||||||| || || ||| ||||| || | Sbjct 12620 TTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTGGCTTTAACATTCTCAATGTT 12679 Query 172007 ATCTGACGA--TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATC 172064 ||| || | ||| ||||| || ||||||||||||||||| | ||||||| || || Sbjct 12680 ATC--ACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAGATT 12737 Query 172065 TGCAT 172069 ||||| Sbjct 12738 TGCAT 12742 >seq90 Length=44396 Score = 143 bits (158), Expect = 5e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 |||||||||||| | || ||| ||||| || | || | || || || |||||||| Sbjct 14436 AATACCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATC 14377 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 ||||||| || | || || ||||||||||| ||||| || | | ||||| || || Sbjct 14376 GGATAAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGG 14317 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || |||||||| ||||| || || ||| || || || | ||||| ||| Sbjct 14316 TGGGATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTC 14257 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| ||||||||||||||||| ||||||| ||| || ||||| || Sbjct 14256 AACTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCATCTT 14203 >seq102 Length=41085 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | || || || | ||| | ||||| || || ||||| Sbjct 618 ATACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCA 559 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||||||||| ||||||||||| ||||| || ||| Sbjct 558 GAGAGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGT 499 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || || ||||| ||| |||| || ||| Sbjct 498 GGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCA 439 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || |||||||||||||| | ||||||| || || ||||| Sbjct 438 ACTTCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 Score = 125 bits (138), Expect = 1e-23 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||| ||||| || | ||| | ||||| ||||| ||||| Sbjct 390 ATACCACCTCTTAATCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCA 331 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || |||||||||||||| ||||||||||| ||||| || ||| Sbjct 330 GAAAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGT 271 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA--TT 172017 || || |||||||| ||||| || || ||| ||||| || |||| || | || Sbjct 270 GGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATC--ACTACCTT 213 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || |||| || || || || ||||| | ||||||| || || ||||| Sbjct 212 CGACCTCTAAGGTGATAGTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCAT 161 Score = 104 bits (114), Expect = 4e-17 Identities = 112/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || | |||||||| | ||| | ||||| || || ||||| Sbjct 162 ATACCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 103 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGC-AAAAATTAATCTCTGTTGGTCAGG 171958 || | || || | || || ||||| |||||||| |||||||||||| ||||| || || Sbjct 102 GAGAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTGATCTGG 43 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTT 171985 ||| || |||||||||||||| ||||| Sbjct 42 TGGAATACCTTCTTTATCTTGGATTTT 16 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||||||||| | || | || || || | ||| | ||||| || || ||||| | Sbjct 845 TACCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAG 786 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 | | || || | || || |||||||||||||| ||||| | | ||||| || |||| Sbjct 785 AGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTG 726 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA--TTC 172018 | || |||||||| ||||| || || ||| ||||| || |||| || | ||| Sbjct 725 GAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATC--ACTACCTTC 668 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || ||||| || ||||| | ||||||| || || ||||| Sbjct 667 GACCTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCAT 617 >seq23 Length=58329 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 ||||||| | | || ||||||||||||||| ||| |||||| ||||||||||||| Sbjct 22167 TACCACCACGTAATCTTAATACTAAATGTAATGTACTCTCTTTTTGAATATTATAATCTT 22108 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 ||| | || || || |||||| |||| ||||| | |||||| ||||| || || Sbjct 22107 TTAATGTTCTACTATCTTCTAATTGTCTACCTGCAAATAGTAATCTTTGTTGATCTAATG 22048 Query 171961 GTATTCCTTC 171970 |||||||||| Sbjct 22047 GTATTCCTTC 22038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905115951237600