Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq319 194 5e-44 seq642 168 2e-36 seq267 134 4e-26 >seq319 Length=25483 Score = 194 bits (214), Expect = 5e-44 Identities = 589/897 (66%), Gaps = 26/897 (3%) Strand=Plus/Minus Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 || || ||| ||| | ||||| ||||||||||| || || ||||| || |||||| Sbjct 7440 CAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTGGCATTGCAAGCA 7381 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAG 155768 ||||| || | ||| |||| || || || || | || | |||| ||| | ||| Sbjct 7380 TCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGAGATTCCATAATGGCGAACCAA 7321 Query 155769 AGGTCACGGGCATTAATT-TGCTTGTTGTATCTGCCT--TCCGACT-CATATTTCATATA 155824 || || | || |||||| | | | ||| | |||| | | || ||||||||| || Sbjct 7320 AGATCTTGAGCTTTAATTATACGTCTTGG-TAGGCCTGGTGTGGCTTCATATTTCAAGTA 7262 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 || | || | | ||| || | ||| || || || | | || ||||| Sbjct 7261 GAGAGCACGATGTTGTTCAGAGTGAGTTTCAGCAAGACCTGGTGCTTCGTTTGGACAAAA 7202 Query 155885 CAGCGACCAA-----ATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAA 155939 || | |||| ||||| || ||| ||||||||||||| | |||||| ||||| Sbjct 7201 GAGAGCCCAATCACCATTTTGTT--CGA---CACGCTCCATAAAGATATCACTGACCCAA 7147 Query 155940 ATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTC 155998 | |||||||||||||| || || | |||||| | || ||| || ||| || || Sbjct 7146 AGGGCATAGAAAAGGTCTCTAGCTCTCATCTCCTCTTTACCAGTGTTT-TTCTTGAGATC 7088 Query 155999 TAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCT 156058 | |||||| | ||| | || |||||||| || | ||||| ||| || || Sbjct 7087 AATGAATTCAAAGACATCGGCGTGCCATGGCTCCAAGTAAACGGCAAAGGCACCTTTTCT 7028 Query 156059 CTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAAT 156115 ||||||||| ||||| || || |||||||| | |||||| |||| ||||| || | Sbjct 7027 CTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTGGTAC 6968 Query 156116 AATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCA-GATGAGC--GAACATT 156172 | ||||||| ||| |||||||| || ||||||| ||| || ||| ||| || Sbjct 6967 CAAACCATTGCTAGTACCATTGGTACCACGAATAT---AACTTTGAGCAGCACGAATTTT 6911 Query 156173 ATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGT 156232 ||||| | ||||||||||| | | || || || | ||||||| || | || Sbjct 6910 ATGAACGGCAATACCAATACCACCAGCACTCTTTGAGATGAGTGCGCATTGTTTCAAGGT 6851 Query 156233 ATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTG 156292 || | | ||||| || || ||||| |||| |||| | || | || ||| | ||| Sbjct 6850 ATCGTAGATACCATCGATTGAATCCTCTTTCATTTGAACTAAGAAACAAGAAGACATTTG 6791 Query 156293 AGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGA 156352 ||| |||||| || || ||||||| || ||||| |||||| | || | || | || Sbjct 6790 TGGTGATGGTGTACCTGCATTGAATAAGGTTGGTGTGGCATGAGTGAATAATTTCTCTGA 6731 Query 156353 CATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGAC 156412 | | | |||||| | || |||| | || || |||| || || || Sbjct 6730 TAAACGTTTGTATGTGTTGATAGCAGAATCAATGTCTTCGCCATGGATACCAATTGAAAC 6671 Query 156413 CCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGC 156472 | |||| |||| || || ||||| || || || ||| |||| || |||| || | Sbjct 6670 ACGCATCAACATGTGTTGTGGACGTTCGACGATTTTGCCACCAATACGATGAAGATAGGA 6611 Query 156473 GCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529 ||||||| ||||| || || || ||||| | |||||||| | |||||||| Sbjct 6610 ACGTTCCAATGTTTTGAATCCAAAGAAATCATAATCGAAATCACGATAATAATCAAT 6554 >seq642 Length=17076 Score = 168 bits (186), Expect = 2e-36 Identities = 337/496 (68%), Gaps = 5/496 (1%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||| || ||||||| | | ||||||| || || ||||||| ||| || ||||| Sbjct 10885 CTATCGAATCTACCAGGTCTAAGTAATGCTTTATCCAAGATATCGGGTCTATTGGTTGCG 10944 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || | || |||| || | | || || |||||||| || | ||| || Sbjct 10945 GCAAGCACCACAACGTTTTTCAATGGTTTGAAACCATCCATTTCAACCAACAATTGGTTC 11004 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | ||| | || | |||||| |||||||| || |||| | | || | | | Sbjct 11005 AATGTATTCTCACGTTCATCGTTTGAACCAGAGAAACCACCTTTACCTCTAGCTCT---A 11061 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||||||||| ||||| |||||||| | | ||| || | ||| | ||| || | || Sbjct 11062 CCAACAGCATCGATTTCATCAATGAATACAATACATGGTGCATTCTTTCTAGCTTGTTCA 11121 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| ||||| ||||| |||| |||| ||||||| |||| ||||| || || ||| | Sbjct 11122 AATAAATCTCTAACACGTGATGGACCAACACCAACAAACATCTCTACGAAATCTGAA-CC 11180 Query 289150 GATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | |||||| ||||| ||||||||| || || ||| || | || | | ||| || Sbjct 11181 ACTGGTTGAATAGAATGGTACATTTGCCTCACCAGCTGTGGCTTTAGCAATCAATGTTTT 11240 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||| || || |||||||| |||| | | || |||||| ||||| ||| | Sbjct 11241 ACCAGTACCTGGTGGTCCTACTAAAATTGCACCTCTTGGTATCTTTGCACCAATGTCATG 11300 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 |||||| || |||||||||| | ||||| ||| |||| ||| ||| || ||| | Sbjct 11301 GAATTTCTTTGGATTCTTTAAAAAGTTTACAAATTCTTCAATCTCAACTTTAGCTTCACC 11360 Query 289329 ACATCCTGCTACATCA 289344 | |||||||||||| Sbjct 11361 AAGACCTGCTACATCA 11376 >seq267 Length=26111 Score = 134 bits (148), Expect = 4e-26 Identities = 203/287 (71%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 |||||| ||||||||||||||| ||||||||||||||| |||||||| | ||| | | Sbjct 20035 ACGACGTTGAATATAACCAGTTTCAGATGTTTTTACAGCAGTATCAATCAAACCTTCTCT 20094 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTC 302711 |||||||||||||||||| || | |||| || || || | || | | || |||| Sbjct 20095 ACCACCCATAGCATGGAAAAAGAATTCTTGAGGAGTTAAACCACGAAGATATGAATTCTC 20154 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 ||||||||||| ||| || || ||| ||||| || ||||| | || || | Sbjct 20155 TACGAAACCACGACTCTCTGGACCATAGTCATCTTTGGTGAAATGTGGTAATGTTCTACT 20214 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCAT 302831 | | || |||| ||||| || || || || || || || || | || | ||||| Sbjct 20215 TTGGAAACCAAATGGAATACGTTTACCTTCTACATTTTGTTGACCTACACAAGCCATCAT 20274 Query 302832 CTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCATTTACCAT 302876 ||| || ||||| ||| | | || ||||| || ||| ||||||| Sbjct 20275 CTGTGAGATATT--AATGAAAGAACCTTTGGAACCTGCAGTTACCAT 20319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471784184221164