Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 >seq1 Length=107950 Score = 150 bits (166), Expect = 2e-31 Identities = 358/536 (67%), Gaps = 20/536 (4%) Strand=Plus/Minus Query 41646 TGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTT 41705 |||| | || || || || ||||| || || ||||| || ||||| ||||| ||||| | Sbjct 66568 TGTCTCTGCCCACCCCAATCATGGCCGGCGTCCGTACCCCGACGCGCCAGTTCTCCAGCT 66509 Query 41706 GCGTAGTGATTGAATCAGGTGA----TTCACTGGGTTCTCTGAATGCTGTAACCTCTGCG 41761 |||| ||||||| || | || || | ||| || | |||| ||||||| Sbjct 66508 GCGTTCTGATTGAGTCCGAAGACAGTTTGAAAGGGATC----AGCGCTGCGTCCTCTGCC 66453 Query 41762 ATCGTGAAGTATATTTCACAACGTGCTGGTATCGG---TGTAAACGCCGGACATATTCGC 41818 || | | || | || | |||||||| || || || | | ||| | || Sbjct 66452 ATTATCGATTACGTGTCGCGTCGTGCTGGCATTGGGATTGGTTTTGGCCGAC---TGCGT 66396 Query 41819 GCGATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGG 41878 || |||| | | ||||| ||| ||||| || || ||||| ||||| || | Sbjct 66395 GCATTGGGGAGTGAGATCCGCAATGGAGAAGCCACCCACACTGGCGTAATCCCCTTTCTG 66336 Query 41879 AAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCA 41938 ||||| | ||||| || || ||||| || || || ||||| ||||| ||||| || || Sbjct 66335 AAACACTTCCAGACCGCTGTGAAATCATGCTCGCAGGGTGGCGTTCGAGGTGGCGCAGCG 66276 Query 41939 ACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAAC 41998 ||| | || || || |||||| |||||||||||| |||||||| |||| || ||| Sbjct 66275 ACGGCTTTCTACCCTATTTGGCATCTGGAAGTTGAAAGTCTGCTGGTATTGAAGAATAAC 66216 Query 41999 AAAGGTGTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTG 42058 || | || | |||||| | ||||| ||||| ||||||||| | | ||| || Sbjct 66215 CGCGGCATCGAGGAGAACCGTGTTCGTCATCTGGACTATGGCGTAATGATCAACCGCCTG 66156 Query 42059 ATGTATAAACGTTTGATGAATAACGATTACATCACTCTGTTCAGCCCTGATGTTGCTAAC 42118 |||||| || || | ||||| | || || ||||||||||| ||| || || | Sbjct 66155 ATGTATCGCCGCCTGGTACGCAACGAGAATATTACGCTGTTCAGCCCGCATGATG-TACC 66097 Query 42119 GATCGTCTGTATGATGCGTTCTATCAAGCGGATCAGACTGAATTCGAAGAACTGTA 42174 | | || |||||||| |||| | | |||||| ||||||||| ||||| Sbjct 66096 G--GGGCTCTATGATGCTTTCTTT---GTTGATCAGGACAAATTCGAAGCGCTGTA 66046 Score = 107 bits (118), Expect = 2e-18 Identities = 283/424 (67%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 42843 AATACGGCTTGCGTAACTCAACGCTTTCTGCTTTAATGCCATGTGAGA-GTAGTTCTCAA 42901 |||| || |||||||||| || || | ||| ||||| || || | || | ||| Sbjct 65353 AATATGGTCTGCGTAACTCTACCCTGACAGCTCAGATGCCGTGCGAAACGTCCAGC-CAA 65295 Query 42902 GTAAGTAACTCCACAAACGGTATTGAACCGCCTCGCGGCCCTGTGAGTGTGAAATCTTCG 42961 | | ||||||||||| ||||| |||||||| || || ||||| |||||||| || Sbjct 65294 ATCACCAACTCCACAAATGGTATCGAACCGCCGCGTGGTCCTGTTTCCGTGAAATCATCC 65235 Query 42962 AAGGAAGGTTCATTT--AACCAGGTAGTTCCGAACCATAATGACCAGATTGATTTCTATG 43019 || || || |||| || ||| |||||| || | ||| | || ||| || | Sbjct 65234 AAAGACGG--CATTGTGAAAATGGTGGTTCCGGACTTTGCTGAGCTGAAAGATCAGTACG 65177 Query 43020 ATTATCTCTGGACAATGGCTAAACGCGGTAACAAAGGTTATCTGTCTCATGTTGCTGTTA 43079 | || || ||| ||| | | |||| || |||||| | | ||||| | | Sbjct 65176 AGTACCTTTGGGATATGCCGGA------TAACCGCGGCTATCTGACCAAAGTTGCGATCA 65123 Query 43080 TGCAGAAGTTTGTTGACCAGGCTATCTCTGCAAACACCGACTATGATCCGGCTAACTATG 43139 | |||||||| ||||||||||||| || || |||||| ||||||| || || || Sbjct 65122 TTCAGAAGTTCTTTGACCAGGCTATTTCAGCCAACACCAACTATGACCCTACTCGCTTCC 65063 Query 43140 CTGATGGTAAAGTTCCGACTGAGGAAAT--CTTAGATGACCTCCTGTACGCGAACTATTT 43197 | | | || ||||| | ||| ||| | ||| || || || || | ||| | | Sbjct 65062 CGGGCGACAAGGTTCC-AATGATGAAGTTGCTT-GAAGATCTGCTCTTCGCTTATCAGCA 65005 Query 43198 CGGTGTTAAAACACTGTATTACCACAACACCCGCGATGGTGCTGGTGAAGATGAAGCGGA 43257 || || || || || |||||||||||||| || |||||||| ||| | ||||| || Sbjct 65004 AGGCGTGAAGACGCTTTATTACCACAACACACGAGATGGTGCCGGTAAGCGTGAAGACGA 64945 Query 43258 AGAT 43261 ||| Sbjct 64944 TGAT 64941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563785911865440