Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq2 105 8e-18 seq36 95.1 2e-14 seq550 93.3 5e-14 >seq2 Length=130934 Score = 105 bits (116), Expect = 8e-18 Identities = 127/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 194236 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTGTGG 194294 ||| |||| |||| || ||||| || | ||| | |||| ||||||||| |||||||| Sbjct 30444 CGTGTACCACAAATTGGTGATAAGTTCTCTTCTCGTCATGG-TCAAAAAGGTACTTGTGG 30386 Query 194295 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 194354 |||| |||| ||||||||| | ||||| ||| | |||||| || |||||||| || Sbjct 30385 TATGGCTTATCGTCAAGAAGATTTACCATTCACAGTTGAAGGTATCGTTCCAGATATCAT 30326 Query 194355 TATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 194404 | | |||||| || |||||| || | ||||| ||| |||| | |||| Sbjct 30325 TGTAAATCCACATGCTATTCCATCTCGTATGACTATTGGTCAATTGATTG 30276 >seq36 Length=55639 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 165950 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAA 166009 ||||| ||| | ||||| || ||||| ||||||||||| ||| | ||||||||| Sbjct 15642 ATTAAAGTTTCACAATTGTCAGGCTATGTAGCAGAACAAACCTCATATCATCATGGTGAA 15701 Query 166010 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 166069 ||| |||| | ||| || |||| | || || |||||||||| |||||||| || Sbjct 15702 CAATCTTTAAATTCAACCATTGTTAAAATGGCTCATAATTTTGTTGGCTCAAATAATTTA 15761 Query 166070 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCT 166129 |||| | || ||||||||||||||| | ||| |||| || |||||||| Sbjct 15762 CCATTGTTAACTCCAAGTGGTCAATTTGGTACTCGTTTACAAGGTGGCTCTGATTCTGCC 15821 Query 166130 GCATCAAGATATATTTATAC 166149 || | ||||| || | ||| Sbjct 15822 TCAGCCAGATACATCTTTAC 15841 >seq550 Length=15469 Score = 93.3 bits (102), Expect = 5e-14 Identities = 213/317 (67%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 90890 GGGCTGCACAAGATACTATGCCTTTAAATTGGTCTTTACCTTTGGCCAAAGAACTTG--- 90946 |||| |||||| || ||| | | ||||| | ||||| ||||| || || || Sbjct 14730 GGGCAGCACAACCAACAATGGCCATTGATTGGGCATTACCATTGGCAAATGATATTAAAC 14671 Query 90947 CTTTAGTTAAAAAAGAAACAATTGTTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCAT 91006 | | | |||||| | | || |||| |||||||||||||||||| || || || Sbjct 14670 CACTTGGTAAAAATGTTA---TTATTTCATTTGGTGGAGCAAGTAATAGGGAAATCTCTA 14614 Query 91007 CTGAATTTTCAATAGATGAACTTATTCAAACATATCTTGATGTTATTGAAATGTACAACC 91066 || ||||||| | ||| || | || |||| ||| | | || |||||| || Sbjct 14613 CTTCATTTTCAGTTGATCAATTGGTTGAAACCTATAGTAAAGTGATTGAATCCTATTCTG 14554 Query 91067 CATCTGGGTTGGATTTTGACCTTGAAAACGGGTTGTATAATGCAGATAAAATTTCTTCAG 91126 | | ||| ||||| ||||| | ||||| || || ||||||| ||||| ||||| | | Sbjct 14553 CCTATGGATTGGACTTTGATTTAGAAAATGGCTTATATAATGTCGATAATATTTCATTGG 14494 Query 91127 CACTTTCTGTTGTAAAGTCAAAATATCCCGAATGTA-ATATTTCCTTAACACTACCAACA 91185 || | | | || |||||| || ||| || | ||| |||||| | |||||| Sbjct 14493 CATTAAAAACCCTTATTTCCAAATAT-CCAAATATACAAATTAGTTTAACAGTTCCAACA 14435 Query 91186 ATGCCAACTGGTTTAAC 91202 |||| || ||||||||| Sbjct 14434 ATGCAAAGTGGTTTAAC 14418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632475590355360