Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1199 192 9e-44 seq641 159 5e-34 seq102 150 3e-31 seq90 150 3e-31 seq23 118 2e-21 >seq1199 Length=11192 Score = 192 bits (212), Expect = 9e-44 Identities = 183/234 (78%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||| | || || ||||| || || | || || ||| | | Sbjct 948 TGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCAG 889 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| ||| ||||||| ||| ||||| ||| ||||||||| || ||||| ||||||| Sbjct 888 ATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAAC 829 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||||||||||||||||||||| ||| | | || ||| ||||||| |||| Sbjct 828 AAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAATA 769 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAA 146265 | ||||||||||| || |||||||||| ||| ||||||||||||| || |||| Sbjct 768 TCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGAGGAAATTAAA 715 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||||||||| || ||||| || || | || || ||| | | Sbjct 1404 TGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACATTGGAAGTTGAAGGTTCAG 1345 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| ||| ||||||| ||| ||||| ||| ||||||||| || ||||| || |||| Sbjct 1344 ATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAAC 1285 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || |||||||||||||| ||| | | || ||| ||||||| |||| Sbjct 1284 AACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAATA 1225 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || |||||||||| ||| |||||||||| |||| Sbjct 1224 TCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGTGGTA 1177 Score = 132 bits (146), Expect = 8e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||| || || | || || ||| | | Sbjct 1176 TGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCAG 1117 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| ||| ||||||| ||| ||||| ||| ||||||||| |||||||| || |||| Sbjct 1116 ATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAAC 1057 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || |||||||||||||| ||| | | || | | ||||| || | Sbjct 1056 AACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAACA 997 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| ||| | || || || | |||||||||| || Sbjct 996 TCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 951 >seq641 Length=13309 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||| ||||| | || || ||| || | Sbjct 13197 TGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTG 13138 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | || |||||||||| |||||| ||| ||||||||| ||||| || ||||||| Sbjct 13137 ACAACATCGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAAC 13078 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| |||||||||||||| || ||| | || | | |||||||||| Sbjct 13077 AACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATAATA 13018 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||||| ||| | |||||||||| |||| Sbjct 13017 TCCAAAAAGAATCAACTCTCCATTTGGTACTCAGATTAAGAGGTGGTA 12970 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||||||||| || || || || ||| |||| || ||| | Sbjct 12969 TGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCAG 12910 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| |||| ||||||| |||| || || ||| ||||||||| |||||||| ||||||| Sbjct 12909 ATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAAC 12850 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| |||||||||||||| || ||| | | || | | ||||| || | Sbjct 12849 AAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAACA 12790 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| | || || || | |||||||||| |||| Sbjct 12789 TTCAAAAGGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGGTA 12742 Score = 114 bits (126), Expect = 2e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||| ||||| | || || ||| || | Sbjct 12741 TGCAAATCTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTG 12682 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| ||| | ||||| ||| || || ||| ||||||||| |||||||| ||||||| Sbjct 12681 ATAACATTGAGAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAAC 12622 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| |||||||||||||| || ||| | | || | | ||||| || | Sbjct 12621 AACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAACA 12562 Query 146212 TACAAAAA 146219 | |||||| Sbjct 12561 TTCAAAAA 12554 Score = 98.7 bits (108), Expect = 2e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 146148 CAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTAT 146207 |||||| | |||||||| |||||||||||||| || ||| | | || | | ||||| Sbjct 13309 CAACAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTAC 13250 Query 146208 AATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || ||||||||||| ||| ||||||||||| | |||||||||| |||| Sbjct 13249 AACATTCAAAAAGAATCAACTCTCCATTTAGTACTCAGATTAAGAGGTGGTA 13198 >seq102 Length=41085 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || || || || || | || || ||| || | Sbjct 162 TGCAAATCTTTGTTAAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGTG 221 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| ||| ||||||| ||| || || ||| |||||||| |||||||| ||||||| Sbjct 222 ATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAAC 281 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || |||||||||||||| ||| | | || | | ||||| |||| Sbjct 282 AAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAATA 341 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | || ||||| ||| |||||||||| |||| Sbjct 342 TCCAAAAAGAATCCACTCTTCACTTAGTTTTAAGATTAAGAGGTGGTA 389 Score = 141 bits (156), Expect = 1e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || ||||| || || || | || || ||| || | Sbjct 618 TGCAAATCTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAGGTCGAAGGTAGTG 677 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| ||| ||||||| ||| || || ||| |||||||| |||||||| ||||||| Sbjct 678 ATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAAC 737 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || |||||||||||||| ||| | | || | | ||||| || | Sbjct 738 AACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACA 797 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||||||||| ||| | || || || | |||| ||||| ||||| ||||| || Sbjct 798 TCCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGGTAACTAAATTTT 855 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||| || || | || || ||| | | Sbjct 390 TGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCTG 449 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||| |||| ||||||| || || || ||| |||||||| |||||||| ||||||| Sbjct 450 ATAATATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAAC 509 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || |||||||||||||| ||| | || | | ||||| || | Sbjct 510 AAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACA 569 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | || || || | |||||||||| |||| Sbjct 570 TCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGGTA 617 Score = 120 bits (132), Expect = 5e-22 Identities = 115/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 146115 AAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTT-GCAGGTAA 146173 ||||| ||| ||||||||| |||||||| |||||||||||| | |||||| || ||||| Sbjct 16 AAAATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTTCGCTGGTAA 75 Query 146174 ACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCA 146233 |||||||| ||| | || | | ||||| || || ||||||||||| ||| |||| Sbjct 76 GCAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACTCTCCA 135 Query 146234 TTTAGTATTACGATTAAGAGGAGGTA 146259 |||||| | |||||||||| |||| Sbjct 136 TTTAGTTCTCAGATTAAGAGGTGGTA 161 >seq90 Length=44396 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||| || ||||| || ||| | || || ||| | | Sbjct 14207 TGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGTTCAG 14266 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | || |||| || ||| || || ||| |||||||| || ||||| ||||||| Sbjct 14267 ACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGATCAAC 14326 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| |||||||||||||| ||| | | || ||| | |||||||| | Sbjct 14327 AACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTATAACA 14386 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || |||| ||||| ||| |||||||||| |||| Sbjct 14387 TCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGGTA 14434 >seq23 Length=58329 Score = 118 bits (130), Expect = 2e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 146130 GAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAAT 146189 ||||| || ||| |||||||||||| | | |||||||||| ||||||||| |||| | Sbjct 22038 GAAGGAATACCATTAGATCAACAAAGATTACTATTTGCAGGTAGACAATTAGAAGATAGT 22097 Query 146190 AGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTA 146249 ||||| |||| |||||||||||| |||||||| || | |||||||||||| ||||| Sbjct 22098 AGAACATTAAAAGATTATAATATTCAAAAAGAGAGTACATTACATTTAGTATTAAGATTA 22157 Query 146250 AGAGGAGGTA 146259 | || |||| Sbjct 22158 CGTGGTGGTA 22167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786148986414240