Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq641 174 1e-38 seq102 152 4e-32 seq90 138 9e-28 seq1199 134 1e-26 >seq641 Length=13309 Score = 174 bits (192), Expect = 1e-38 Identities = 168/213 (79%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| |||||||| ||||||||||| ||||| | || || ||| ||| Sbjct 12759 AGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCT 12818 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || || | ||||||||||| ||||| || |||||||| ||||| ||| Sbjct 12819 TCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATCT 12878 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| |||| ||| ||| |||| | | | || || ||| ||||||||||| ||||| Sbjct 12879 TG-AATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAACTTCAAGAGTGATAGT 12937 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| ||||||||||| || ||||| Sbjct 12938 CTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||||||| || || ||||||||||| || |||||||| | | || || ||| Sbjct 12987 AGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGGCCATCT 13046 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| || || | || | | ||| ||||| || |||||||| ||||| ||| Sbjct 13047 TCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTATCT 13106 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| || ||| |||| | ||||| | ||| ||||| || || || ||| Sbjct 13107 TGGATTTTAGCCTTTACATTTTCGATGTTGTCACTACCTTCAACTTCGAGTGTAATGGTT 13166 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | |||||||||||| || ||||| Sbjct 13167 TTACCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 29598 TTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATAT 29657 |||||||||||| ||||| | || || ||| ||| || | |||||| || || | || Sbjct 12554 TTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAAT 12613 Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTC 29717 | | ||| ||||| || |||||||| ||||| ||||| | || ||| ||| | || Sbjct 12614 GAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTGGCTTTAACATTCTC 12673 Query 29718 TACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 | | ||| | ||| ||||| || || || ||||| ||||| | |||||||||||| Sbjct 12674 AATGTTATCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAA 12733 Query 29778 TATCTGCAT 29786 || ||||| Sbjct 12734 GATTTGCAT 12742 >seq102 Length=41085 Score = 152 bits (168), Expect = 4e-32 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| |||||||||||||| ||||| ||||| | | || || ||| Sbjct 600 AGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCCATCT 541 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| ||||| | || |||||||| ||||| || |||||||| ||||||||| Sbjct 540 TCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCT 481 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | |||||| |||| | | | |||||| ||| ||||| | || || || Sbjct 480 TG-AATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACTTCCAAGGTGATGGT 422 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| | ||||||||||| || ||||| Sbjct 421 TTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 Score = 138 bits (152), Expect = 9e-28 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || ||||| |||||||||||||| || || ||||| | || || ||| ||| || Sbjct 369 ACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCTTCT 310 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| ||||| | || |||||||| ||||| || |||||||| ||||||||||| Sbjct 309 AATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTG- 251 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | ||| ||| |||| | | ||| | ||| || || | || ||||| || Sbjct 250 AATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGATAGTCTT 191 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| | ||||||||||| || ||||| Sbjct 190 GCCAGTGAGAGTTTTAACAAAGATTTGCAT 161 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||| ||||| |||||||||||||| ||||| ||||| | Sbjct 843 CCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 784 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || | |||||| ||||| | || | | ||| ||||| || ||| Sbjct 783 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGA 724 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| ||| || | ||| ||| |||| | | ||| | ||| || Sbjct 723 ATACCTTCTTTGTCTTG-AATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGAC 665 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || ||||| | |||||||||||| || ||||| Sbjct 664 CTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCAT 617 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| || |||||||||||||| ||||| ||||| | | || || ||| Sbjct 144 AGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGGCCATCT 85 Query 29635 TCGAGTTGTTTGCCAGC-ATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||| || ||||| | | || |||||||| ||||| || |||||||| ||||| || Sbjct 84 TCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTATC 25 Query 29694 TTGTAATTTTTG-TTTGACAGTTT 29716 ||| | |||| | |||||| ||| Sbjct 24 TTGGATTTTTGGCCTTGACATTTT 1 >seq90 Length=44396 Score = 138 bits (152), Expect = 9e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || || || || ||||| ||||| ||||||||||| | | || ||| ||| || Sbjct 14414 ACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGATAAAGTACGACCATCTTCT 14355 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| || ||| | || | | ||| ||||| || || ||||| ||||||||||| Sbjct 14354 AATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTG- 14296 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | |||||| |||| | |||| ||| ||| ||||| ||||| || ||||| Sbjct 14295 AATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACTTCGAGAGTGATGGTTTT 14236 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||||||||||| || || ||||| || Sbjct 14235 ACCAGTTAAGGTTTTAACGAAGATTTGCATCTT 14203 >seq1199 Length=11192 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| |||||||||||||| ||||| ||||| | || || ||| ||| Sbjct 966 AGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCT 1025 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||| ||||| | || | | ||| || || || |||||||| ||||| ||| Sbjct 1026 TCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCT 1085 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | ||| ||| |||| | | || ||| ||| ||||| | || || || Sbjct 1086 TG-AATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGACTTCTAATGTGATGGT 1144 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| | ||||||||||| || ||||| Sbjct 1145 TTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || || | | || ||||| || |||||||||||||| || || ||||| | Sbjct 722 TCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGA 781 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || ||| ||| || | |||||| || ||| | || |||||||| ||||| || || Sbjct 782 TAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGATCTGGTGG 841 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| | ||| ||||||| |||| | | || ||| ||| || Sbjct 842 GATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATGTTATCTGAACCTTCGAC 901 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || ||||| ||||| | ||||| ||||| || ||||| Sbjct 902 TTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| || |||||||||||||| || || ||||| | | || ||| ||| || Sbjct 1197 ACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGATAAAGTACGACCATCTTCT 1256 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| ||||| | || | | ||| || || || || ||||| ||||| ||||| Sbjct 1257 AATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTG- 1315 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | ||| ||| |||| | | || ||| ||| ||||| | || || ||||| Sbjct 1316 AATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAACTTCCAATGTGATGGTTTT 1375 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||||||||| || ||||| Sbjct 1376 ACCAGTTAATGTTTTAACAAAAATTTGCAT 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385210880709852