Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 seq550 93.3 5e-14 seq36 86.0 8e-12 >seq2 Length=130934 Score = 111 bits (122), Expect = 2e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||| |||| |||| || ||||| || | ||| | |||| | ||||||| |||||||| Sbjct 30444 CGTGTACCACAAATTGGTGATAAGTTCTCTTCTCGTCATGGTC-AAAAAGGTACTTGTGG 30386 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 |||| |||| ||||||||| | ||||| |||| | |||||| || |||||||| || Sbjct 30385 TATGGCTTATCGTCAAGAAGATTTACCATTCACAGTTGAAGGTATCGTTCCAGATATCAT 30326 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 | | |||||| || ||||||||| | ||||| ||| |||| | |||| Sbjct 30325 TGTAAATCCACATGCTATTCCATCTCGTATGACTATTGGTCAATTGATTG 30276 >seq550 Length=15469 Score = 93.3 bits (102), Expect = 5e-14 Identities = 414/653 (63%), Gaps = 39/653 (6%) Strand=Plus/Minus Query 92153 ATCATTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCATCTGAATTTTCAATAGATGAA 92212 || ||||| |||||||||||||||||| || || || || ||||||| | ||| || Sbjct 14653 ATTATTTCATTTGGTGGAGCAAGTAATAGGGAAATCTCTACTTCATTTTCAGTTGATCAA 14594 Query 92213 CTTATTCAAACATATCTTGATATTATTGAAATGTACAACCCATCTGGGTTAGATTTTGAT 92272 | || |||| ||| | | | |||||| || | | ||| || || |||||| Sbjct 14593 TTGGTTGAAACCTATAGTAAAGTGATTGAATCCTATTCTGCCTATGGATTGGACTTTGAT 14534 Query 92273 CTTGAAAATGGGTTGTATAATGCAGATAAAATTTCTTCAGCAATTTCTGTTGTAAAGTCA 92332 | |||||||| || ||||||| ||||| ||||| | ||| | | | || Sbjct 14533 TTAGAAAATGGCTTATATAATGTCGATAATATTTCATTGGCATTAAAAACCCTTATTTCC 14474 Query 92333 AAACATCCCGAATGTA-ATATTTCCTTAACACTACCAACAATGCCAACGGGTTTAACAAA 92391 ||| || || ||| || | ||| |||||| | |||||||||| || |||||||| | Sbjct 14473 AAATAT-CCAAATATACAAATTAGTTTAACAGTTCCAACAATGCAAAGTGGTTTAACTGA 14415 Query 92392 TGTTGGATTGGGATTAGTGTCTACTTNNNNNNNNNNNNNNNNNNNNNNTATGGTTAACGG 92451 | |||| || | || ||| ||| || || || Sbjct 14414 TACTGGAAAAGGTCTTGTTGAAGCTTTTAAAAAAGGAGGATTCAATTTTATCGTCAATGG 14355 Query 92452 TATGGCTATGGACTATTATTCACCCGAAGCTGCTTTAAATATGGGTCAAGCAGCTGTTAA 92511 |||||| ||||| || ||| | || | | | | |||||| |||| ||| |||| Sbjct 14354 TATGGCAATGGATTACTAT--AACCAA----GAGAAAGAAATGGGTGAAGCCGCTATTAA 14301 Query 92512 TGCTGCAAAAAGTATTA--------CT------TCTCAAT---TAATTAAATTA-AATCA 92553 ||||||| ||||| | || ||| || | ||||| | | | | | Sbjct 14300 AGCTGCAACTAGTATCAAGGATTATCTAAAAACTCTTTATCCATCATTAAGTGACACTGA 14241 Query 92554 AACACCTG---AAGTAGGAATAACACCTATGATTGGTCTTAATGATGATTTGTCAATGTT 92610 | | || | |||| ||| || || ||||||||| | ||||||||| | | ||||| Sbjct 14240 ATTATTTGCAAAGGTAGCAATCACTCCAATGATTGGTTTAAATGATGATCTAACTATGTT 14181 Query 92611 T--CATTTAAAAGATGCTCAATTTTTAGCATCACAATCAAAA--AACTTAAAT--TTTTT 92664 | |||| | ||||| | |||| ||| ||||| || || || ||| Sbjct 14180 TACCATT--GATGATGCGGCAAAGGTAGCTTCATTTGCAAAATCAAATTCTATGGCTTTC 14123 Query 92665 AAGTTAT--TGGTCTTTTAATAGAGATAATCCTTCTTCTTTTCCATATGTTGATTTACAA 92722 | | || ||| ||| ||| | |||||||| ||||| || | |||||||||||| | Sbjct 14122 ACTTCATCATGGAATTTGAATCGTGATAATCCATCTTCATTCTCTTATGTTGATTTAACA 14063 Query 92723 TCTAGTAGTAATCCAGAACAAAAAGAAAGCGGTGAATATGCAAAGATATTTGT 92775 ||| | |||||||| ||||||||| ||||| ||| |||| | |||||| Sbjct 14062 TCTTCTTCAAATCCAGATCAAAAAGAACCTGGTGAGTATTCAAAAACATTTGT 14010 >seq36 Length=55639 Score = 86.0 bits (94), Expect = 8e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 162998 ATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAA 163057 ||||| ||| | ||||| || ||||| || |||||||| ||| | || |||||| Sbjct 15642 ATTAAAGTTTCACAATTGTCAGGCTATGTAGCAGAACAAACCTCATATCATCATGGTGAA 15701 Query 163058 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 163117 ||| |||| | ||| || |||| | || || |||||||||| |||||||| || Sbjct 15702 CAATCTTTAAATTCAACCATTGTTAAAATGGCTCATAATTTTGTTGGCTCAAATAATTTA 15761 Query 163118 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCG 163177 |||| | || ||||||||||||||| | ||| |||| || |||||||| Sbjct 15762 CCATTGTTAACTCCAAGTGGTCAATTTGGTACTCGTTTACAAGGTGGCTCTGATTCTGCC 15821 Query 163178 GCATCAAGATATATTTATAC 163197 || | ||||| || | ||| Sbjct 15822 TCAGCCAGATACATCTTTAC 15841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635163530816160