Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq550 159 5e-34 seq2 89.7 7e-13 >seq550 Length=15469 Score = 159 bits (176), Expect = 5e-34 Identities = 476/725 (66%), Gaps = 47/725 (6%) Strand=Plus/Minus Query 93140 GGGCTGCTCAAGATACTATG-CCATTAGACTGGTCTTTACCTTTAGCCAAAGAACTTGCT 93198 |||| || ||| || ||| ||||| || ||| | ||||| || || || || || Sbjct 14730 GGGCAGCACAACCAACAATGGCCATT-GATTGGGCATTACCATTGGCAAATGATATTAAA 14672 Query 93199 TTATCTGGTAAAGAAACAATTATTTCATTCGGTGGAGCAAGTAACCCAGATATTTCATCT 93258 | ||||||| | ||||||||||| |||||||||||||| || || || || Sbjct 14671 CCACTTGGTAAAAATGTTATTATTTCATTTGGTGGAGCAAGTAATAGGGAAATCTCTACT 14612 Query 93259 AAATTTTCAATTGATGAATTGGTTCAAACTTACTTTGATGTAATAGAATTATATAATCCA 93318 ||||||| ||||| |||||||| |||| || | | || || |||| ||| | | Sbjct 14611 TCATTTTCAGTTGATCAATTGGTTGAAACCTATAGTAAAGTGATTGAATCCTATTCTGCC 14552 Query 93319 TCTGGATTAGATTTTGATTTAGAAAATGGTTTGTATGACGCAGAAAAAATAAGTTCAGCT 93378 | |||||| || ||||||||||||||||| || ||| | | || || || |||| Sbjct 14551 TATGGATTGGACTTTGATTTAGAAAATGGCTTATATAATGTCGATAATAT---TTCA--- 14498 Query 93379 GTTGGCATT-------GTCAAATCTAAATACCCTAATTGTAATATTTCTCTGACACTACC 93431 |||||||| | | || ||||| || ||| | ||| | | ||| | || Sbjct 14497 -TTGGCATTAAAAACCCTTATTTCCAAATATCCAAATATACAAATTAGTTTAACAGTTCC 14439 Query 93432 AACAATGCCAACTGGTTTAACGGCTGTTGGATTAAAACTTGTCTCAATTTTTCaaaaaaa 93491 |||||||| || ||||||||| | | |||| | ||||| | || ||| |||||| Sbjct 14438 AACAATGCAAAGTGGTTTAACTGATACTGGAAAAGGTCTTGT-TGAAGCTTTTAAAAAAG 14380 Query 93492 TA-ATTTTGATTTTGTGGTCAATGGTATGGCTATGGATTATTATTCTCCGGAAGCAGCTT 93550 | || ||||| | |||||||||||||| |||||||| ||| | ||| || Sbjct 14379 GAGGATTCAATTTTATCGTCAATGGTATGGCAATGGATTACTATAACC---AAG-AG--A 14326 Query 93551 TGGATATGGGTAAAGCTGCCGTTGAAGCAGCAAAAAGTATTGCATCTCAACTGGCTAAA- 93609 || |||||| |||| || || |||| |||| ||||| || | | ||||| Sbjct 14325 AAGAAATGGGTGAAGCCGCTATTAAAGCTGCAACTAGTAT--CA--AGGATTATCTAAAA 14270 Query 93610 ---GTGTACCCATC------TGAACCATCTATATATTCTAAGGTAGGAATAACACCTATG 93660 | || ||||| ||| | ||| | | ||||||| ||| || || ||| Sbjct 14269 ACTCTTTATCCATCATTAAGTGACACTGAATTATTTGCAAAGGTAGCAATCACTCCAATG 14210 Query 93661 ATTGGTCTAAATGATGATTTATCAATGTTTAAATTAAAAGATGCTGCTCTTTTAGGATCA 93720 |||||| ||||||||||| || | ||||||| | | ||||| || ||| ||| Sbjct 14209 ATTGGTTTAAATGATGATCTAACTATGTTTACCATTGATGATGCGGCAAAGGTAGCTTCA 14150 Query 93721 TTCCAAAAATTAAACTTTATAGGTTT---------TTGGTCCTTCAATCGAGATAATCCA 93771 || ||||| ||| | ||| | ||| ||| || ||||| ||||||||| Sbjct 14149 TTTGCAAAATCAAATTCTATGGCTTTCACTTCATCATGGAATTTGAATCGTGATAATCCA 14090 Query 93772 TCATCTTTGGGACATGTTGACCTACAAACAAGCAGTAATCCGGAACAAAAAGAAAGTGGT 93831 || || || ||||||| || | | ||||| || ||||||||| |||| Sbjct 14089 TCTTCATTCTCTTATGTTGATTTAACATCTTCTTCAAATCCAGATCAAAAAGAACCTGGT 14030 Query 93832 GAGTA 93836 ||||| Sbjct 14029 GAGTA 14025 >seq2 Length=130934 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 201564 ATACGTATACCAGAAATTGGAGATAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTG 201622 || ||| ||||| ||||||| ||||| || | |||| | |||| | ||||||| ||||| Sbjct 30447 ATGCGTGTACCACAAATTGGTGATAAGTTCTCTTCTCGTCATGGTC-AAAAAGGTACTTG 30389 Query 201623 TGGTATGATTTATGCACAAGAAGATATGCCGTTTACACAATCG--GGTATGACCCCGGAT 201680 ||||||| |||| ||||||||| | || || |||| | | ||||| || ||| Sbjct 30388 TGGTATGGCTTATCGTCAAGAAGATTTACCATT--CACAGTTGAAGGTATCGTTCCAGAT 30331 Query 201681 ATTATAATCAATCCAAATTGTATACCATCAAGAATGACCATAAATCAAATAATTGCAACT 201740 || || | |||||| || ||| ||||| | ||||| || |||| | |||| | | Sbjct 30330 ATCATTGTAAATCCACATGCTATTCCATCTCGTATGACTATTGGTCAATTGATTGAATGT 30271 Query 201741 GTTATGGGTAAATTAT 201756 || | |||||| ||| Sbjct 30270 CTTCTTGGTAAAGTAT 30255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655265485548000