Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq2 102 1e-16 seq36 100 4e-16 seq550 87.8 2e-12 seq41 84.2 3e-11 >seq2 Length=130934 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051 ||| |||| |||| || ||||| || | ||| | |||| | ||||||| |||||||| Sbjct 30444 CGTGTACCACAAATTGGTGATAAGTTCTCTTCTCGTCATGGTC-AAAAAGGTACTTGTGG 30386 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 |||| |||| ||||||||| | ||||| ||| | |||||| || |||||||| || Sbjct 30385 TATGGCTTATCGTCAAGAAGATTTACCATTCACAGTTGAAGGTATCGTTCCAGATATCAT 30326 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 193161 | | |||||| || |||||| || | ||||| ||| |||| | |||| Sbjct 30325 TGTAAATCCACATGCTATTCCATCTCGTATGACTATTGGTCAATTGATTG 30276 >seq36 Length=55639 Score = 100 bits (110), Expect = 4e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 ||||||||| | ||||| || ||||| ||||||||||| ||| | ||||||||| Sbjct 15642 ATTAAAGTTTCACAATTGTCAGGCTATGTAGCAGAACAAACCTCATATCATCATGGTGAA 15701 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 ||| |||| | ||| || |||| | || || |||||||||| |||||||| || Sbjct 15702 CAATCTTTAAATTCAACCATTGTTAAAATGGCTCATAATTTTGTTGGCTCAAATAATTTA 15761 Query 165280 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCG 165339 |||| | || ||||||||||||||| | ||| |||| || |||||||| Sbjct 15762 CCATTGTTAACTCCAAGTGGTCAATTTGGTACTCGTTTACAAGGTGGCTCTGATTCTGCC 15821 Query 165340 GCATCAAGATATATTTATAC 165359 || | ||||| || | ||| Sbjct 15822 TCAGCCAGATACATCTTTAC 15841 >seq550 Length=15469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 212/317 (67%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 89564 GGGCTGCACAAGATACTATGCCTTTAAATTGGTCTTTACCTTTGGCCAAAGAACTTG--- 89620 |||| |||||| || ||| | | ||||| | ||||| ||||| || || || Sbjct 14730 GGGCAGCACAACCAACAATGGCCATTGATTGGGCATTACCATTGGCAAATGATATTAAAC 14671 Query 89621 CTTTAGTTAAAAAAGAAACAATTGTTTCTTTTGGTGGAGCAAGTAATCCAGATATTTCAT 89680 | | | |||||| | | || |||| |||||||||||||||||| || || || Sbjct 14670 CACTTGGTAAAAATGTTA---TTATTTCATTTGGTGGAGCAAGTAATAGGGAAATCTCTA 14614 Query 89681 CTGAATTTTCAATAGAAGAACTTATTCAAACATATCTTGATATTATTGAAATGTACAACC 89740 || ||||||| | || || | || |||| ||| | | | |||||| || Sbjct 14613 CTTCATTTTCAGTTGATCAATTGGTTGAAACCTATAGTAAAGTGATTGAATCCTATTCTG 14554 Query 89741 CATCTGGGTTGGATTTTGACCTTGAAAATGGATTGTATAATGCAGATAAAATTTCTTCAG 89800 | | ||| ||||| ||||| | |||||||| || ||||||| ||||| ||||| | | Sbjct 14553 CCTATGGATTGGACTTTGATTTAGAAAATGGCTTATATAATGTCGATAATATTTCATTGG 14494 Query 89801 CAATTTCTGTTGTAAAGTCAAAATATCCCGAATGTA-ATATTTCCTTAACACTACCAACA 89859 || | | | || |||||| || ||| || | ||| |||||| | |||||| Sbjct 14493 CATTAAAAACCCTTATTTCCAAATAT-CCAAATATACAAATTAGTTTAACAGTTCCAACA 14435 Query 89860 ATGCCAACTGGTTTAAC 89876 |||| || ||||||||| Sbjct 14434 ATGCAAAGTGGTTTAAC 14418 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/121 (78%), Gaps = 5/121 (4%) Strand=Plus/Minus Query 89447 GGCAAAATTATCCCAATGGTAGACCAAATCCTTTATATGCAAAACAAGCAGA--AATATG 89504 ||||| | ||||| |||| ||||||||||| | ||| ||||||||||||| |||||| Sbjct 14948 GGCAACACTATCCAGATGGAAGACCAAATCCAATTTATTCAAAACAAGCAGAGCAATATG 14889 Query 89505 GGGTGTAGATGGTTTAAT-TTTTGGTTTTATTACTTTATCAGCTaaaaaaaaaGCATGTT 89563 | | || |||||||||| |||||| || ||||||||| || || ||| |||||| Sbjct 14888 G--TTTAAATGGTTTAATTTTTTGGCTTCATTACTTTAAGTTCTCAACAAACCCCATGTT 14831 Query 89564 G 89564 | Sbjct 14830 G 14830 >seq41 Length=55081 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 || ||||| || ||||| | ||| |||||| | ||||| | | ||| | |||||||| Sbjct 23430 ATCAAAGTAGCACAATTGATTGGTTATGTTTCTGAACATTCTGCATATCATCATGGTGAG 23371 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 || ||||| | || || || | |||||||| ||||||||| |||||||||| Sbjct 23370 GCAAGTTTATATTCTACCATCGTTGGTATGGCCCAAGAGTTTGTTGGTTCAAATAATAT- 23312 Query 165280 GCATTACTTGAA--CCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTG 165337 || | || || || | ||| | |||||| ||| | ||| |||||||||| | Sbjct 23311 -CAATCTTTTAAATCCAGCAGGTTCTTATGGTACTAGAATTTCAGGTGGTAAAGATTGTT 23253 Query 165338 CGGCATCAAGATATATTTATACCA 165361 | ||||||||||| |||||| Sbjct 23252 CAAGTGCAAGATATATTCATACCA 23229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628517278033920