Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 >seq1 Length=107950 Score = 140 bits (154), Expect = 3e-28 Identities = 261/380 (69%), Gaps = 5/380 (1%) Strand=Plus/Plus Query 121986 ATGTCGTCAAAGACGATCGACGGGTCTGCCAGGATGTTGCGGATGATGTGGGTGTACGAA 122045 ||| | || ||||| || ||| || ||| || ||| || ||||||||||| Sbjct 64326 ATGCCATCGAAGACAATGCTCGGATCATCCACCATACCGCGAATAATGTGGGTGTAGCTG 64385 Query 122046 CGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGG-TGGTGTC 122104 || |||||| || ||| ||||| ||| || |||||||| ||||| || ||| | Sbjct 64386 CGGCTGTGAATGGTTTCAGAGAACGACCATGTTTCCACCCACGTTTCGAGCTCTGGAATT 64445 Query 122105 GGATACGATCGGCAGAAGAACTGCGTTCGGGCCACGGCCCTGTACAGAGTCCAGAAGGAT 122164 | | | | |||||| || |||||| |||| || ||||| || || ||||| || | Sbjct 64446 GAA-ATAAGCGGCAGCAGCGTTGCGTTTGGGCTGCGTCCCTGAACGGAATCCAGCAGAGT 64504 Query 122165 CTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGAAGATTCATGTAG-- 122222 ||| || |||||||| | ||| |||||| ||| || || | || || | | | Sbjct 64505 CTGGTAACGGAGGTTGCTCAGGAAAATGTGCCGCTCATGCTCTTGCAGCTTAGTATTGAA 64564 Query 122223 -TCAATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTTGCTT 122281 || || || || ||| | || || |||||||| ||||||||||| | || || || Sbjct 64565 ATCGATGCGATCGGTGGTTATGTCGACTTCTTCCGGGCGCCAGAAGAAGGAGAGCTGTTT 64624 Query 122282 TTCGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTTCGGCGT 122341 |||||||||||||||||| | || || ||||| || || || | |||||| | Sbjct 64625 TTCGATCAGCTTTTCGAAATCGCGGTACTTCTGCTGATCGTAGCGCGCAACGTTGACAGA 64684 Query 122342 CTCACCGAGGAACATCGGCT 122361 || ||||||||||| |||| Sbjct 64685 CTGCCCGAGGAACATAGGCT 64704 Score = 113 bits (124), Expect = 4e-20 Identities = 802/1263 (63%), Gaps = 74/1263 (6%) Strand=Plus/Plus Query 122633 ATTGGCAGCTTACCGTCTGGGAAGCTCCAAGGCTTGTAGAACGTGTTGGCAGAAGCTGAC 122692 ||||| | ||| || | ||||||| ||| | ||| |||||||| ||| | | Sbjct 65044 ATTGGAACCTTGTCGCCCGGGAAGCGAGTAGGGTCATAGTTGGTGTTGGCTGAAATAGCC 65103 Query 122693 TGATCGATAAACTTCTGCATGATAGCCACGAGTCCCAGATAAGGGAGTGGGGATTC--CA 122750 || || | |||||||| ||||| || || |||||| | | || || | || Sbjct 65104 TGGTCAAAGAACTTCTGAATGATCGCAACTTTGGTCAGATA--GCCGCGGTTATCCGGCA 65161 Query 122751 TGTCCCACTTGTACTCGTACACCACACTTGGGTCACCAACGCCCGGGACCAACACCGGGA 122810 | ||||| |||||||||| | | | ||| ||| | |||| |||| || | Sbjct 65162 TATCCCAAAGGTACTCGTACTGATCTTTCAGCTCAGCAAAGTCCGGAACCACCATTTTCA 65221 Query 122811 GCATACCCGCAGCGGATTTCTTGAAGGAAATCGCATCACGAGGCGGCTCGAACCCGTTCG 122870 || || | |||| || | ||||| | | |||| ||||| |||| || || | Sbjct 65222 CAATGCCGTCTTTGGATGATTTCACGGAAACAGGACCACGCGGCGGTTCGATACCATTTG 65281 Query 122871 TTGAGTTGGTGATCTGACTTGACGTCTCGCACGGCATCATGGTTGACAGCGTAGAGTTAC 122930 | ||||||||||| || || ||||| |||||||||||| | || ||| |||||||||| Sbjct 65282 TGGAGTTGGTGATTTGGCTGGACGTTTCGCACGGCATCTGAGCTGTCAGGGTAGAGTTAC 65341 Query 122931 GCAGGCCATGGATAGCG-ATTTGAGAGCGAAGCCATTCCCAATCCATCTTCAGTTCA--- 122986 |||| |||| | ||| || | ||| ||| ||||||| ||| ||||| ||| Sbjct 65342 GCAGACCAT-ATTCGCGTATGCGGTCGCGCAGCTCTTCCCAAGGCATTTTCAGCTCAAAG 65400 Query 122987 GCGGTGTGGAGATTA---TCCACTTCCTTTTTGTAACGGTCAATAGGCAGAATGCCTTGG 123043 | || | | ||| || | ||| |||| ||||||| ||||| || ||| Sbjct 65401 GACGTATCAGGGTTAGCGTCAAGCGACTTGCGGTAATGGTCAATCGGCAGCTGTCCCTGG 65460 Query 123044 GAGTATGAGGTTTGGTCATACAGCTTACACTTCCCAAGTTCCTTCGCCAGATCCATCGAC 123103 | ||| |||||| | || | ||| || | | |||||| || | || Sbjct 65461 GCATATTTAGTTTGGGAAAACCAATCACAGGCACCTTTGGCTTCCGCCAG--CCGGCAAC 65518 Query 123104 --GCTTCCAGCAGGTAGAACTGGAATGCTTCTGCCAGTTCGTGAACC-GCATTCGCAGCA 123160 || || |||||||| |||||| ||||| | ||| || ||| || | | || Sbjct 65519 TTGCATCAAGCAGGTAATACTGGATCGCTTCAAACGTTTCATGCACCAGC--TGGTTGCC 65576 Query 123161 CG-AGGATCACTGTACTTCAGTCCACGCTTCGCCAAGTAATACGCCAGGTTGGTCCAGCC 123219 | |||||| || || | ||| |||||||| || ||||| || ||||| ||| Sbjct 65577 GGCCGGATCAGAATAGTTAAATCCGTTCTTCGCCAGATAGTACGCAAGATTGGTAACGCC 65636 Query 123220 AATACCCAGCGTTCGACGATCCTT------AGTCTTCTCTGCCGCCAGTACCGGGTAGTT 123273 | |||| | ||||| | || | | | | |||| ||| | |||||| | Sbjct 65637 GACGCCCAAACTACGACGTGCTTTTGCCGGAATTTCCGCTGCGGCC---ATCGGGTAATC 65693 Query 123274 CTGGTAGTCCAACAGACGGTCAAGTGAGCGCACCAAGGTGCGTACCGGGCCACGGAGGTC 123333 ||| ||||| | || || || ||||||| ||| || || || || || Sbjct 65694 CTGATAGTCGAGTAG--GG--AATCGAGCGCAGCAA-CCGCATAGAATGCAAC----CTC 65744 Query 123334 TTCCAGACTCTCTA-----CCT--TG--CCGAGGTTGATTGCAGACAGCGTACAAAGTGC 123384 || ||| | || | | | || || || || | ||||||||||| ||||| || Sbjct 65745 TTTCAGCGTGTCCAGTGAGCGTAATGCCCCCAGATTAAAGGCAGACAGCGTGCAAAGGGC 65804 Query 123385 AATCTCGCCATCGTCCTCA--GGATTTTTGAGGTCATTGATCGCGTGAGTAGGCAGGGCA 123442 ||||| |||||| | ||| || | | | | | || | ||| ||||| | | Sbjct 65805 GATCTCACCATCGGCGTCATCGG----TAAACGCC----AGCGGTTTAGTTGGCAGCGTA 65856 Query 123443 ATCTCCATGCACAGGTTGGACTGTTTCACCGGGGCCAGTTCTGGATTGAACGGGCTGTTG 123502 ||||||||||| | ||| ||||| | || || || | || |||| ||| | || || Sbjct 65857 ATCTCCATGCATAAGTTTGACTGGTGAACTGGAGCGACTTTCGGATCGAAGGCGCCGTGT 65916 Query 123503 GTGTTGCAGTGGTCAACGTGCTGAATGTAGATGCGTCCTGT-CTGACTGCGCTCCTGCAT 123561 ||| ||||||||||| | ||| || | ||| || || | || || |||||||| Sbjct 65917 TCGTTCATGTGGTCAACGTTCGCAATATACACGCGGCCGGTAGAGGCT-CGTTCCTGCAT 65975 Query 123562 AGCCACG---GAGAAGGCTTCTGCTGCGGAGATGCTTTTCTTAGCCACTTC-CGGATCGG 123617 || | ||||| || | |||| | | |||||| || | | | | ||| | Sbjct 65976 ---CAGGGTTGAGAACAGATCAACAGCGGGAACGGATTTCTT-GCGAATGCTCTCATCAG 66031 Query 123618 CTTCCAACTTCTCGTACAACTCTTCAAATTTCTTCTGGTCGGAGAAGAAATACTCGTACA 123677 |||| | | | ||||| | |||| ||||| | ||| || |||||| || || | Sbjct 66032 CTTCATATTGCAGGTACAGCGCTTCGAATTTGTCCTGATCAACAAAGAAAGCATCATAGA 66091 Query 123678 GCTTGCCACCTGCAACGTTCGGGTGGAACAGAGTGATATT-TCGCCCATGTTGCAGACGT 123736 || || | || | | |||| |||||| || ||||| ||| || ||| || Sbjct 66092 GC---CCCGGTACATCATGCGGGCTGAACAGCGTAATATTCTCG-TTGCGTACCAGGCGG 66147 Query 123737 GCATACAGCATTTTGTTGATTTGCAGGCCGTAGTCAACGTGACGAGCACGGGTGCTCTCT 123796 ||||| || |||||| | ||| ||||| | |||||| ||||| | ||| Sbjct 66148 CGATACATCAGGCGGTTGATCATTACGCCATAGTCCAGATGACGAACACGGTTCTCCTCG 66207 Query 123797 GTGCCACGGTTGTTCTTCATCACGATCAGGTTTTCGAAATCCCAG-TGCCACATAGGGTA 123855 |||| ||||| ||||||| || | ||| |||| || | |||| ||||| |||||||| Sbjct 66208 ATGCCGCGGTTATTCTTCAATACCAGCAGACTTTC-AACTTCCAGATGCCAAATAGGGTA 66266 Query 123856 GAA 123858 ||| Sbjct 66267 GAA 66269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486018034462080