Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq1 159 3e-34 >seq1 Length=107950 Score = 159 bits (176), Expect = 3e-34 Identities = 263/379 (69%), Gaps = 3/379 (1%) Strand=Plus/Plus Query 118890 ATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGAG 118949 ||| |||| ||||| || |||||| ||| || || || || |||||||| | Sbjct 64326 ATGCCATCGAAGACAATGCTCGGATCATCCACCATACCGCGAATAATGTGGGTGTAGCTG 64385 Query 118950 CGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTGTGTCG 119009 || ||| || || ||| ||||| ||| || || ||||| ||||| || || Sbjct 64386 CGGCTGTGAATGGTTTCAGAGAACGACCATGTTTCCACCCACGTTTCGAGCTCTGGAATT 64445 Query 119010 GACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGATC 119069 || | | ||| ||||| |||||| || | || ||||| || |||||||| || || Sbjct 64446 GAAATAAGCGGCAGCAGCGTTGCGTTTGGGCTGCGTCCCTGAACGGAATCCAGCAGAGTC 64505 Query 119070 TGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAG--- 119126 ||||| |||||||| | ||| |||||| ||| || || |||| || | | | Sbjct 64506 TGGTAACGGAGGTTGCTCAGGAAAATGTGCCGCTCATGCTCTTGCAGCTTAGTATTGAAA 64565 Query 119127 TCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTC 119186 ||||| || || ||| | || ||||||||||| ||||||||||| | || || || Sbjct 64566 TCGATGCGATCGGTGGTTATGTCGACTTCTTCCGGGCGCCAGAAGAAGGAGAGCTGTTTT 64625 Query 119187 TCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGTC 119246 ||||||||||| ||||| | | || |||||||| || ||||| | |||||| | | Sbjct 64626 TCGATCAGCTTTTCGAAATCGCGGTACTTCTGCTGATCGTAGCGCGCAACGTTGACAGAC 64685 Query 119247 TCGCCGAGGAACATCGGCT 119265 | ||||||||||| |||| Sbjct 64686 TGCCCGAGGAACATAGGCT 64704 Score = 131 bits (144), Expect = 2e-25 Identities = 283/419 (68%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 119649 TGGTAATACAGCGTCTTCAGTCCGTGCTTATACGCCCACATAATGTCGCGCAGCACAACC 119708 |||||||| |||||||||| || |||| ||| || | | | || |||| | Sbjct 64981 TGGTAATAAAGCGTCTTCACGCCTTGCTGATAAGCGAAGAGCAGATCTTCAAGCAACTTC 65040 Query 119709 TTGATCGGCAGCTTACCGCCAGGGAAATCCCAAGGCTTGTAGAAGGTATTCGCCGACGCA 119768 | || || | ||| |||| ||||| ||| | ||| ||| || || || | Sbjct 65041 ATCATTGGAACCTTGTCGCCCGGGAAGCGAGTAGGGTCATAGTTGGTGTTGGCTGAAATA 65100 Query 119769 GCTTGGTCGATGAACTTCTGCATGATCGCTACGAGGGTCAGGTACGGAATAGGTGAAGC- 119827 || ||||| | ||||||||| |||||||| || |||||| || | ||| | | Sbjct 65101 GCCTGGTCAAAGAACTTCTGAATGATCGCAACTTTGGTCAGATA--GCCGCGGTTATCCG 65158 Query 119828 -CATATCCCACTTGTACTCGTAAACCACGCTCGGGTCACCAACGCCCGGCACCAACACTG 119886 ||||||||| ||||||||| | || | ||| ||| | |||| |||| || | Sbjct 65159 GCATATCCCAAAGGTACTCGTACTGATCTTTCAGCTCAGCAAAGTCCGGAACCACCATTT 65218 Query 119887 GCAGCATACCCGCTCCGGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCGT 119946 || || || || |||| || | ||||| | | |||| || || || | ||| | Sbjct 65219 TCACAATGCCGTCTTTGGATGATTTCACGGAAACAGGACCACGCGGCGGTTCGATACCAT 65278 Query 119947 TCGTGGAGTTGGTAATCTGACTGGACGTCTCGCAAGGCATCATCGTGGACAGCGTAGAGT 120006 | ||||||||||| || || |||||||| ||||| |||||| | | ||| ||||||| Sbjct 65279 TTGTGGAGTTGGTGATTTGGCTGGACGTTTCGCACGGCATCTGAGCTGTCAGGGTAGAGT 65338 Query 120007 TACGCAGTCCATGAATAGCG-ATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTC 120064 ||||||| |||| | | ||| ||| | ||||||| ||||||| ||| ||||| || Sbjct 65339 TACGCAGACCAT-ATTCGCGTATGCGGTCGCGCAGCTCTTCCCAAGGCATTTTCAGCTC 65396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477179830232640