Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq58 87.8 3e-12 seq102 86.0 1e-11 >seq58 Length=51432 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 95218 TGAAGTAATAGGTATAGACGAAGGTCAATTCTTCCTAGATATAGTAGAATTTAGTGAATC 95277 ||| ||||| ||||| || ||||||||||| |||| ||| | ||| ||||||||||| Sbjct 12858 TGATGTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGA 12917 Query 95278 GATGGCTAATTTAGGTAAAATAGTTATTATAGCCGCACTCAATGGT 95323 | || ||| |||||||| |||||||| || |||||| ||||| Sbjct 12918 TTTAGCAAATCAAGGTAAAACCGTTATTATTGCTGCACTCGATGGT 12963 >seq102 Length=41085 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/142 (73%), Gaps = 11/142 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || ||||| |||||||| ||||| | || |||||||| Sbjct 360 AGAGTGGATTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTA 301 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | || |||| |||||||||| |||| | || |||| || ||||||||||| ||| Sbjct 300 CCAGCGAAAATTAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGCT 241 Query 81753 TTTATATTTTCAATCGTATTAC 81774 || | ||||||||| ||| || Sbjct 240 TTAACATTTTCAATGTTATCAC 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903391189441920