Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq319 159 8e-34 seq626 111 4e-19 seq267 91.5 3e-13 seq36 91.5 3e-13 >seq319 Length=25483 Score = 159 bits (176), Expect = 8e-34 Identities = 604/934 (65%), Gaps = 34/934 (4%) Strand=Plus/Plus Query 110236 ATGTCGTAAAGAAACATAAAACAAAACTAAATAATATTATCGATTATACTCGTGACTATG 110295 || |||||| ||||||| || | | | | | | || |||||| |||||| | | Sbjct 6516 ATATCGTAATGAAACATGGTGAAAGATTGGAGAGTGTCATTGATTATTATCGTGATTTCG 6575 Query 110296 ATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCG 110355 || ||| | ||||| |||||||| | |||||| | ||| | | |||| | |||| Sbjct 6576 ATTATGATTTCTTTGGATTCAAAACATTGGAACGTTCCTATCTTCATCGTATTGGTGGCA 6635 Query 110356 AGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATG 110415 | ||| | |||||||| ||||||||||| | |||||| | |||||||| ||||| | | Sbjct 6636 AAATCGTCGAACGTCCACAACACATGTTGATGCGTGTTTCAATTGGTATCCATGGCGAAG 6695 Query 110416 ATATTAAAGCTGTTATTGAATGTTATGATGTATTA--AGTAAAAAGAAAGCTATTCATGC 110473 | ||| | ||| ||| | || | ||| || | ||| | | | |||||| Sbjct 6696 ACATTGATTCTGCTATCAACACATACAAACGTTTATCAG-AGAAATTATTC-ACTCATGC 6753 Query 110474 TACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC- 110532 || || ||| |||| || ||||| || | |||| || ||||||| |||||| Sbjct 6754 CACACCAACCTTATTCAATGCAGGTACACCATCACCACAAATGTCTTCTTG-TTTCTTAG 6812 Query 110533 TAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTA 110592 | ||| || || ||||| || || ||||| || ||| | | ||| || || || | Sbjct 6813 TTCAAATGAAAGAGGATTCAATCGATGGTATCTACGATACCTTGAAACAATGCGCACTCA 6872 Query 110593 TTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCG-----CTCAAAAGG 110647 | || || | |||| || ||||||||| ||||||| | ||||| |||||| Sbjct 6873 TCTCAAAGAGTGCTGGTGGTATTGGTATTGCCGTTCATAAAATTCGTGCTGCTCAAAGTT 6932 Query 110648 AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTT 110707 | || ||| | | || ||| || | ||| | || |||||| | | || || Sbjct 6933 AT---AT-TCGTGGTACC-AATGGTACTAGCAATGGTTTGGTACCAATGCTTCGTGTTTT 6987 Query 110708 CAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTAT 110764 ||| || ||||| || || ||||||||||| |||||||| || | ||||| | Sbjct 6988 CAATGATACTGCTCGTTACGTCGATCAAGGTGGTGGCAAGAGAAAAGGTGCCTTTGCCGT 7047 Query 110765 CTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGG 110824 || | || || ||||| | ||| | ||||||||| | || || ||||| || Sbjct 7048 TTACTTGGAGCCATGGCACGCCGATGTCTTTGAATTCATTGATCTCAAGAAAAACACTGG 7107 Query 110825 ATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCAT 110884 || || ||||| | || | || ||||| | ||| | ||| | || || Sbjct 7108 TAAAGAGGAGATGAGAGCTAGAGACCTTTTCTATGCCCTTTGGGTCAGTGATATCTTTAT 7167 Query 110885 GAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCT 110944 | | ||||| || ||||||| ||| |||| | ||||| | | || ||||| Sbjct 7168 GGAGCGTGTCGAACAAAATGGTGATTGGGCTCTCTTTTGTCCAAACGAAGCACCAGGTCT 7227 Query 110945 ATCTGA---TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAA---AAAGA 110998 |||| | | || | || | || || ||| ||||||||| | | Sbjct 7228 TGCTGAAACTCACTCTGAACAACATCGTGCT---CTCTACTTGAAATATGAAGCCACACC 7284 Query 110999 AGGCAAGTTTCGCAAACA---AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATC 111055 |||| | | | || |||| ||||||||| ||||||||| || | ||||| Sbjct 7285 AGGCC---TACCAAGACGTATAATTAAAGCTCAAGATCTTTGGTTCGCCATTATGGAATC 7341 Query 111056 ACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAA 111115 |||||||||||||| || || | || |||||||| ||| | ||| |||||| || Sbjct 7342 TCAAGTTGAAACTGGTACACCATTCATCTTGTATAAGGATGCTTGCAATGCCAAATCCAA 7401 Query 111116 TCAAATGAATTTAGGAACAATTAAGTCTAGTAAT 111149 ||||| ||||||||| || |||| ||||||| Sbjct 7402 TCAAAAGAATTTAGGTACCATTAGTAGTAGTAAT 7435 >seq626 Length=13846 Score = 111 bits (122), Expect = 4e-19 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 |||||||| | ||||| ||||| |||||| | || || ||| |||| |||| | ||| Sbjct 7550 TGTTCAATCGTCAACCCTCACTTCATAAACTATCGATTATGTCTCACAAAGCTAGAGTTA 7609 Query 305394 TATC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTT 305452 | | |||| || |||| || |||| | ||| |||||| ||||| ||||| ||||| Sbjct 7610 TGCCATGGAGA-ACCCTTCGTTTCAATGAATGTGTTTGTACACCTTACAATGCAGATTTC 7668 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| |||||||||||||| ||| |||||||| Sbjct 7669 GATGGTGATGAAATGAATATTCATTTACCTCAA 7701 >seq267 Length=26111 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/184 (73%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| | ||||| |||| || | |||||| | ||||| ||||| ||||||||| Sbjct 21267 AGACATATCAATGATGGTGATGTAGTAATTTTCAATCGTCAACCTTCACTCCATAAAATG 21208 Query 305366 TCTATGATGGCTCATAAAGTCAAAG-TATTATCTGGATTGACATTTCGATTAAA--TGTA 305422 |||||||||| |||| |||||| ||| | | | || || || ||||| | | Sbjct 21207 TCTATGATGGGTCATCGTATCAAAGTTATGCCATACAGT-ACTTTCCGTTTAAATCTTTC 21149 Query 305423 AGT-GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| ||| | || || ||||| ||||| ||||| |||||||||||| | |||||||| Sbjct 21148 AGTAACTT---CCCCATACAATGCAGATTTCGATGGTGATGAAATGAATCTTCATGTACC 21092 Query 305482 TCAA 305485 ||| Sbjct 21091 ACAA 21088 Score = 87.8 bits (96), Expect = 4e-12 Identities = 174/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| ||| | || || | | ||||||||||| |||| | || || Sbjct 21681 TTACAATTTCACGTCGCCACCTATGTTGATAATGAAATACCTGGTTTACCACAAGCTCAA 21622 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 ||| | || || ||||| || || |||| | ||||| | ||||||||||| ||| | Sbjct 21621 CAACGTTCAGGTAGACCATTGAAATCTATTCGTCAACGTTTGAAAGGTAAAGAAGGTAGA 21562 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 ||| |||||||||| ||||| |||||||||||||| || | | || || ||| | Sbjct 21561 ATTAGAGGTAATCTTATGGGTAAACGTGTTGATTTCTCCGCTCGTACAGTCATTACAGCC 21502 Query 305066 GATTCTCAAATTAGTC--TTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAA 305123 ||| ||||| || | || | |||| || ||| | |||||| | || ||| Sbjct 21501 GAT--CCAAATCTTTCAATCGATCAGGTAGGTGTACCACGTTCAATTGCACTCAATTTAA 21444 Query 305124 CATTTCCAGAGAAAGT 305139 ||| |||||||| ||| Sbjct 21443 CATATCCAGAGACAGT 21428 >seq36 Length=55639 Score = 91.5 bits (100), Expect = 3e-13 Identities = 392/610 (64%), Gaps = 41/610 (7%) Strand=Plus/Plus Query 279068 ATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCTTTA 279127 ||| ||||| | ||||||||||| ||||| || ||| ||||| | || || | || Sbjct 14760 ATTTCAAAATTGGATGATGCAAATTGGGCCGGTGGTTTAAAATCAAAGGAGTGCACATTG 14819 Query 279128 TTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGGT 279187 || | ||||| || ||||| || |||| || | || |||||| |||| ||||| Sbjct 14820 ATTATCACTGAAGGTGATTCAGCAAAATCATTGGCATTGGCAGGTTTAAGTGTTGTTGGT 14879 Query 279188 CGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAAATC 279247 ||| || |||||| || || || ||| | |||||| || | |||| |||||| Sbjct 14880 CGTAATGCATATGGTGTGTTCCCATTACGTGGTAAACTATTGAATGTGCGTGAT------ 14933 Query 279248 ACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAACAA 279307 | | | ||| ||| || | |||| || | | |||| | | Sbjct 14934 ---------GTTAATCCAAAACAATTATTATCCAATGAAGAGATTAATAATCTCACCACC 14984 Query 279308 ATATTGGGATTAGAGC--AAG-GTA--AAAAATA-CAAAGATA-CATCAAG--TTTACGA 279358 || || || ||| | ||| ||| | ||| | | || | || || |||||| Sbjct 14985 ATTTTAGGTTTATCACATAAGAGTACCTATGATACCGATGAAAGTATGGAGGATTTACGT 15044 Query 279359 TATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTA 279418 |||||||||||||| ||| || | || |||||| ||||| || || ||||| ||| Sbjct 15045 TATGGTAAAATTATGATTATGGCTGATCAAGATCATGATGGTTCGCATATAAAAGGTTTA 15104 Query 279419 ATACTTAATTGGGTTGA-TACTTTCTGGCCAGAATTGTTGAATCAAAATTTTGTAAGTGT 279477 | | |||| || | |||||| |||||| | ||||| | ||| ||| | Sbjct 15105 GTTATCAATTTCATTCATTACTTT-TGGCCAACTCTTTTGAAACGTGGTTTCGTAGAAGA 15163 Query 279478 GTTTCAAACACCAATTATTAAGGCAACTAAAGGT--AAAAAAGAAGAAGT-ATTTTATTC 279534 ||| ||||||||||| |||||||| ||| || || | ||||||| ||| | | | Sbjct 15164 ATTTGTTACACCAATTATAAAGGCAACCAAAAGTTCAACTCAAAAGAAGTCATTCTTTAC 15223 Query 279535 ATTGCAGAAGTTTGAACAATGGAAAGATTCAGTTGAGAATTCAGCCTCATT----CCATA 279590 | | | | | |||| |||||| || || || | ||||| ||| | ||| Sbjct 15224 AATTAAAGACTATGAAAAATGGAGAGGATCCATT---ACTTCAGATCAATTGAAACAATA 15280 Query 279591 C-----CAAGTATTTTAAAGGTTTAGCAACATCCAATACTAAGGAAGCAAAAGAATATTT 279645 | || |||| ||||||||||| ||||| | | | ||||||||||||||||| Sbjct 15281 CACCATTAAATATTATAAAGGTTTAGGTACATCAACCAGTGCTGAAGCAAAAGAATATTT 15340 Query 279646 TAAAAAATTA 279655 || || ||| Sbjct 15341 TAGTAATTTA 15350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186785854898892