Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq641 131 1e-25 seq102 131 1e-25 seq1199 116 2e-21 seq90 113 3e-20 >seq641 Length=13309 Score = 131 bits (144), Expect = 1e-25 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | | ||||| || |||||| || ||||| ||||||||||| || Sbjct 12743 ACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 12802 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || ||||||||||| || || |||||||| | || |||||| | || Sbjct 12803 AAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGG 12862 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGA---TTC 33698 | ||||||||| || ||| || ||||| ||||| ||| | | ||| ||| Sbjct 12863 AATACCTTCTTTATCTTGAATCTT-TGTTTTAACATTTTCA--ATATTATCTGAGCTTTC 12919 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || |||| ||||| || ||||| ||||| ||||| |||||||| |||||| Sbjct 12920 AACTTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCATA 12971 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | | |||||||| ||||| |||||||| || || ||||| || Sbjct 12971 ACCACCTCTTAATCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGA 13030 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || ||||||||||| || || ||||| | ||| || |||||| | || Sbjct 13031 GAGAGTACGGCCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGG 13090 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| | | |||| || | | |||| || ||| | Sbjct 13091 AATACCTTCTTTATCTTGGATTTT-AGCCTTTACATTTTCGATGTTGTCACTACCTTCAA 13149 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || |||||||| || | ||||| ||||| || |||||| Sbjct 13150 CTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAAATTTGCATA 13199 Score = 98.7 bits (108), Expect = 7e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33561 TTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAAT 33620 |||||| ||||||||||| || || || || | || ||||||||||| || || ||||| Sbjct 12554 TTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAAT 12613 Query 33621 CAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGT 33680 | ||| || |||||| | || | ||||||||| || || || | || ||||| | Sbjct 12614 GAGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTT-GGCTTTAACATTCT 12672 Query 33681 C-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAA 33739 | | | | || || ||| || || | || || |||||||| || | ||||| |||| Sbjct 12673 CAATGTTATCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAA 12732 Query 33740 AGATCTGCATA 33750 |||| |||||| Sbjct 12733 AGATTTGCATA 12743 >seq102 Length=41085 Score = 131 bits (144), Expect = 1e-25 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 33511 ATAAAATC--GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTA 33568 ||||||| || |||||||||||| | | ||||| || |||||| |||||||| | Sbjct 857 ATAAAATTTAGTTACCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGA 798 Query 33569 TGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCT 33628 |||||||||| ||||| || || | || || |||||||| || || ||||| | ||| | Sbjct 797 TGTTGTAATCAGAGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTT 738 Query 33629 GCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTG 33687 | |||||| | || | |||||||||||| ||| || | || ||||| || | | | Sbjct 737 GTTGATCTGGTGGAATACCTTCTTTGTCTTGAATCTT-GGCTTTAACATTTTCAATGTTA 679 Query 33688 TCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGC 33747 || || ||| || || | ||||| || || || || | ||||| |||||||| ||| Sbjct 678 TCACTACCTTCGACCTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGC 619 Query 33748 ATA 33750 ||| Sbjct 618 ATA 616 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | ||| || || || |||||| |||||||| || |||||||| || Sbjct 388 ACCACCTCTTAATCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGA 329 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || |||||||| || || ||||| || | || |||||| | || Sbjct 328 AAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGG 269 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||| || | || ||||| || | | | || || ||| | Sbjct 268 AATACCTTCTTTGTCTTGAATCTT-GGCTTTAACATTTTCAATGTTATCACTACCTTCGA 210 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | ||||| |||||||| |||||| Sbjct 209 CCTCTAAGGTGATAGTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCATA 160 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | | ||||| || |||||| |||||||| ||||||||||| || Sbjct 616 ACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 557 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || || |||||||| || || ||||| || | || |||||| | || Sbjct 556 GAGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGG 497 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||| || | | |||| || | | || ||| | Sbjct 496 AATACCTTCTTTGTCTTGAATCTT-GGCCTTGACATTTTCAATATTATCAGAACCTTCAA 438 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || | ||||| |||||||| |||||| Sbjct 437 CTTCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATA 388 Score = 89.7 bits (98), Expect = 3e-13 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | | || ||||| |||||| |||||||| ||||||||||| || Sbjct 160 ACCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGA 101 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGC-AAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || || | || || ||||| || || || |||||| || | || |||||| | | Sbjct 100 GAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTGATCTGGTG 41 Query 33641 GCACACCTTCTTTGTC 33656 | | ||||||||| || Sbjct 40 GAATACCTTCTTTATC 25 >seq1199 Length=11192 Score = 116 bits (128), Expect = 2e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| || | | ||||| || |||||| |||||||| ||||||||||| || Sbjct 951 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 1010 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || |||||||| || || ||||| | ||| || || ||| | || Sbjct 1011 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGA 1070 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGA--TTCCA 33700 | ||||||||| || |||||| | || ||||| ||| || | || | ||| | Sbjct 1071 ATACCTTCTTTATCTTGAATTTT-GGCTTTAACATTTTCAATGT-TATCTGAACCTTCGA 1128 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || | ||||| |||||||| |||||| Sbjct 1129 CTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCATA 1178 Score = 105 bits (116), Expect = 4e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || | ||| || ||||| || ||| |||||||| || |||||||| || Sbjct 723 CCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 782 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || || |||||||| || |||||||| || | || |||||| | || Sbjct 783 AAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGATCTGGTGGG 842 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGA--TTCCA 33700 | ||||||||| || ||||| ||| | ||| ||| || | || | ||| | Sbjct 843 ATACCTTCTTTATCTTGGATTTTGGCTTTGA-CATTTTCAATGT-TATCTGAACCTTCGA 900 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| |||||||| || | |||||||||||||| ||||| Sbjct 901 CTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 >seq90 Length=44396 Score = 113 bits (124), Expect = 3e-20 Identities = 175/246 (71%), Gaps = 7/246 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| || | ||| || || || || || || ||||| ||||| |||||||| Sbjct 14433 ACCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGA 14374 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || |||||||| |||||||| || | ||| || |||||| | || Sbjct 14373 TAAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGG 14314 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGA---TTC 33698 | |||||||||||| ||| || | || || | | || ||| | ||| ||| Sbjct 14313 GATACCTTCTTTGTCTTGAATCTT-GGCTTTGACGT--TTTCGATGTTGTCTGAACCTTC 14257 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 || || | ||||| |||||||| ||||| ||||| || ||||| ||||| ||| | | Sbjct 14256 AACTTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCAT-CTTGATCT 14198 Query 33759 GTTTAT 33764 || ||| Sbjct 14197 GTCTAT 14192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696901226240