Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq102 125 2e-23 seq90 114 3e-20 seq641 98.7 2e-15 >seq102 Length=41085 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| |||||||| ||| ||||||| | | ||| Sbjct 404 AAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCTGATAATATTGAAAAT 463 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| |||||||| ||| || || |||||| | || ||| Sbjct 464 GTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTC 523 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || || |||||||| | ||| | | ||||||||| |||| ||||| || Sbjct 524 GCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCC 583 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 584 ACTCTTCAC 592 Score = 105 bits (116), Expect = 2e-17 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| || || || ||| || ||| | | ||| Sbjct 176 AAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGTGATAACATTGAAAAT 235 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| ||| || || |||||| | || || Sbjct 236 GTTAAAGCCAA-GATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTT 294 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || || |||||||| | ||| | | |||||||| |||| ||||| || Sbjct 295 CGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAATATCCAAAAAGAATC 354 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | ||||| ||| Sbjct 355 CACTCTTCACTTAGTTTTAAGA 376 Score = 105 bits (116), Expect = 2e-17 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| ||||| || ||||| || || || ||| || ||| | | ||| Sbjct 632 AAAACCCTCACTGGAAAGACCATCACCTTAGAGGTCGAAGGTAGTGATAACATTGAAAAT 691 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| ||| || || ||| | || || || Sbjct 692 GTTAAAGCCAA-GATTCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTT 750 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || || |||||||| | ||| | | ||||||||| |||| ||||| || Sbjct 751 CGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATCCAAAAAGAATC 810 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | ||| | ||| Sbjct 811 CACTCTTCACTTGGTTCTCAGA 832 >seq90 Length=44396 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| |||||| | ||||| ||| |||| |||| ||||| Sbjct 14221 AAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGTTCAGACAACATCGAAAAC 14280 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| || || || ||| | |||||||| Sbjct 14281 GTCAAAGCCAA-GATTCAAGACAAAGAAGGTATCCCACCAGATCAACAACGTCTTATCTT 14339 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || || |||||||| | ||||| ||||||| ||| |||| || || || Sbjct 14340 TGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTATAACATCCAAAAGGAATC 14399 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || || ||| | ||||| ||| Sbjct 14400 AACCCTCCACTTAGTTTTAAGA 14421 >seq641 Length=13309 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || |||||| | ||||| ||||| || || | | ||| Sbjct 12955 AAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCAGATAATATTGAAAAT 12896 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || || |||||||||||| |||||||| ||| || || |||||| | || ||| Sbjct 12895 GTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTGATTTTC 12836 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| | ||| | | ||||||||| | || || || || Sbjct 12835 GCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAACATTCAAAAGGAATCC 12776 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 12775 ACTCTTCAC 12767 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || | ||||| ||| || ||||| ||||| Sbjct 13183 AAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATCGAAAAT 13124 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || ||||| |||||||| ||| || || ||| | || || ||| Sbjct 13123 GTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAACAACGTCTCATTTTC 13064 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| | ||| | | ||||| || |||| ||||| || Sbjct 13063 GCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATAATATCCAAAAAGAATCA 13004 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 13003 ACTCTCCA 12996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181793968236012