Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1199 147 2e-30 seq641 131 1e-25 seq102 125 6e-24 seq319 98.7 9e-16 >seq1199 Length=11192 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||||||||| | || || ||| | ||||| | |||||||||| Sbjct 950 CATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTC 891 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||| || || | || ||| ||||| |||||||| ||||| || || ||||| Sbjct 890 AGATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCA 831 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | |||| | || |||||| | ||||||| | | | | | |||||||| Sbjct 830 ACAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAA 771 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 ||| |||||||||||||| | |||||||| |||||||| ||||||||||| Sbjct 770 TATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGAGGAAA 720 Score = 147 bits (162), Expect = 2e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 ||||| |||||| | ||||| ||||||||||| || ||| | ||||| | ||||| || Sbjct 1412 AAACATTATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACATTGGAAGTTGA 1353 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 || |||| || || | || ||| |||||| |||||||| ||||| || || Sbjct 1352 AGGTTCAGATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACC 1293 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 || || ||| | ||||||| || || |||||| | ||||||| | | | | | || Sbjct 1292 AGACCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGA 1233 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||| |||||||||||||| | |||||||| |||||||| ||||| || Sbjct 1232 TTACAATATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGTGG 1179 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | ||||| | |||||||||| Sbjct 1177 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 1118 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||| || || | || ||| |||||| |||||||| ||||| || || || || Sbjct 1117 GATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1058 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || || |||||| | ||||||| | | | | | |||||||| Sbjct 1057 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 998 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| |||| || || | ||||| ||||| || Sbjct 997 ATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 951 >seq641 Length=13309 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||||||||| || || | ||||| | ||||| ||| | Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCA 12911 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||| ||| || | || ||| ||| ||| |||||||| ||||| || || ||||| Sbjct 12910 GATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 12851 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| || || |||||| | ||||||| | | | | | |||||||| Sbjct 12850 CAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12791 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| |||||||| |||| || || | ||||| ||||| || Sbjct 12790 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 12744 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | || || ||||||| |||| | Sbjct 13198 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 13139 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || | ||||| | ||||| ||||| |||||||| ||||| || || ||||| Sbjct 13138 GACAACATCGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 13079 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || || |||||| | ||||||| | | | || ||||| ||| Sbjct 13078 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATAAT 13019 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||||||||| || | ||||| || | ||||| ||||| || Sbjct 13018 ATCCAAAAAGAATCAACTCTCCATTTGGTACTCAGATTAAGAGGTGG 12972 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | || || ||||||| |||| | Sbjct 12742 ATGCAAATCTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 12683 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||| || ||| | || ||| || || |||||||| ||||| || || ||||| Sbjct 12682 GATAACATTGAGAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAA 12623 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || || |||||| | ||||||| | | | | | |||||||| Sbjct 12622 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12563 Query 25355 ATTCAAAAA 25363 ||||||||| Sbjct 12562 ATTCAAAAA 12554 >seq102 Length=41085 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || || | ||||| | || ||||||| | Sbjct 161 ATGCAAATCTTTGTTAAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGT 220 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||| || || | || ||| || ||| || ||||| ||||| || || ||||| Sbjct 221 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 280 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| || || |||||| | ||||||| | | | | | ||||||||| Sbjct 281 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 340 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| |||| ||||| |||||||| ||||| || Sbjct 341 ATCCAAAAAGAATCCACTCTTCACTTAGTTTTAAGATTAAGAGGTGG 387 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || ||||| | ||||| | || ||||||| | Sbjct 617 ATGCAAATCTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAGGTCGAAGGTAGT 676 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||| || || | || ||| || ||| || ||||| ||||| || || ||||| Sbjct 677 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 736 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || || |||||| | ||||||| | | | | || |||||||| Sbjct 737 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 796 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 || |||||||||||||| |||| || || | ||||||||||| || || Sbjct 797 ATCCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGGTAA 846 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | ||||| | ||||| |||| Sbjct 389 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCT 448 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||| ||| || | || || || ||| || ||||| ||||| || || ||||| Sbjct 449 GATAATATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 508 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| || || |||||| | ||||||| | | | || |||||||| Sbjct 509 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAAC 568 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| |||| || || | ||||| ||||| || Sbjct 569 ATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGC-GGCAAACAACTCGA 25326 |||||||| ||||| || || ||||| |||||| | |||| || || || ||| | || Sbjct 25 GATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTTCGCTGGTAAGCAATTAGA 84 Query 25327 AGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||| | | | || |||||||| || |||||||||||||| | |||||||| | Sbjct 85 AGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACTCTCCATTTAGTTCT 144 Query 25387 AAGATTGAGAGGAGG 25401 ||||| ||||| || Sbjct 145 CAGATTAAGAGGTGG 159 >seq319 Length=25483 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || |||||||| || | || ||||| || ||| | ||||||||||| || |||||| Sbjct 8436 ACAGTGAATTGAATAGCATCAGCGGCTGGACGAGTACGGAGATAGTACATACCAGTCTTT 8377 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 ||||| ||| ||| || || ||| ||||| | | | | || | || || || Sbjct 8376 AAACCTTTCCTCCATGAGTAGAAATGCATAGAGGTGAGTTTGGCAAAGGTTGGTTCTGCA 8317 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 | ||||| ||| | |||||| ||||||||| ||| || || || |||||||| || Sbjct 8316 ATGAAAACATTGAAACTTTGGCTTTGATCGATGAAAGCACCACGATCAGCGGCCAT-ATC 8258 Query 136819 AAT-AGTACTTTTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTT 136865 ||| || | |||| |||||||||| | |||||| |||| || || Sbjct 8257 AATGAGAGTTCTTTGACGAATTTCCCAAACAGTTTTATAGAGTTCTTT 8210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445084541159040