Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1199 118 9e-22 seq102 104 2e-17 seq641 98.7 8e-16 seq90 91.5 1e-13 >seq1199 Length=11192 Score = 118 bits (130), Expect = 9e-22 Identities = 169/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 106253 TTTAAAA----ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAA 106308 ||||||| ||||||||||||||||||||||| ||||| || ||||| || ||||| Sbjct 1416 TTTAAAACATTATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACATTGGAAG 1357 Query 106309 CAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGC 106368 ||| ||| ||| | || ||| |||||| || |||||||| | | Sbjct 1356 TTGAAGGTTCAGATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCC 1297 Query 106369 CCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGG 106428 | || |||||| | || |||| || || ||||||||||||||| | ||| | Sbjct 1296 CACCAGACCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTTTAT 1237 Query 106429 GCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||||||| || ||||||||||| ||||| |||||||| || || ||| |||| || Sbjct 1236 CAGATTACAATATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGTGG 1179 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| | ||||| || ||||| || | ||| ||| Sbjct 949 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 890 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| ||| | || ||| ||||| || |||||||| | || |||||| Sbjct 889 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAA 830 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || ||||||||||||||| | ||| | |||||||| Sbjct 829 CAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 770 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||||||||| ||||| |||||||| || || ||| |||||||| Sbjct 769 ATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGAGGA 722 >seq102 Length=41085 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||||||||| | ||||||||||| || ||| | || ||| | Sbjct 161 ATGCAAATCTTTGTTAAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGT 220 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| ||| | || ||| || ||| ||||||||||| | || |||||| Sbjct 221 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 280 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| || || ||||||||||||||| | ||| | |||||||| Sbjct 281 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 340 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || || || ||||| || || ||| |||| || Sbjct 341 ATCCAAAAAGAATCCACTCTTCACTTAGTTTTAAGATTAAGAGGTGG 387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||||||||| | ||||| |||||||| ||| | || ||| | Sbjct 617 ATGCAAATCTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAGGTCGAAGGTAGT 676 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| ||| | || ||| || ||| ||||||||||| | || |||||| Sbjct 677 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 736 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| || || ||||||||||||||| | ||| | ||||||||| Sbjct 737 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 796 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || || || || || | || || |||| || Sbjct 797 ATCCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGG 843 >seq641 Length=13309 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||||||||| ||||| ||||| || || | ||| ||| | Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCA 12911 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||| ||| || |||||||| | || |||||| Sbjct 12910 GATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 12851 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| || || |||||||| |||||| | ||| | ||||||||| Sbjct 12850 CAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12791 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||| || || || || || | || ||| |||| || Sbjct 12790 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 12744 >seq90 Length=44396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || |||||||| || |||||||| || ||||| || ||||| || | ||| ||| Sbjct 14203 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14262 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 || | | | || ||| || ||| ||||||||||| | || ||| Sbjct 14263 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 14322 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | ||||| | ||| || ||||||||||||||| | ||| | |||||| Sbjct 14323 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 14382 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| ||||| ||||| || || || ||||| || || ||| |||| || Sbjct 14383 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 14432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402320911189376