Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq90 136 4e-27 seq641 125 7e-24 seq1199 107 2e-18 seq102 86.0 6e-12 >seq90 Length=44396 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || || || | ||| || || ||||||||||| ||||| || ||| Sbjct 14432 CCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGAT 14373 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | ||||| || ||||| || | ||| || ||||| || || Sbjct 14372 AAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 14313 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGT-GTCGGACGATTCCAC 134665 || |||||||| |||||||| || |||||| | | | |||| ||| || ||| || Sbjct 14312 ATACCTTCTTTGTCTTGAATCTTGGCTTTGAC-GTTTTCGATGTTGTCTGAACCTTCAAC 14254 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||| Sbjct 14253 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCATCTTG 14202 >seq641 Length=13309 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || | || | ||| || ||||||||||||||||||||||| || | Sbjct 12744 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 12803 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | ||||| ||||| |||||||| | || ||||| || || Sbjct 12804 AGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGA 12863 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCAC 134665 || |||||||| ||||||| | ||||||| | | | |||| | || || ||| || Sbjct 12864 ATACCTTCTTTATCTTGAA-TCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAAC 12922 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || ||||| ||||| |||||||| || |||||||| Sbjct 12923 TTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATC 134585 |||||||||||||| || || || || || || | ||||| ||||| ||||| Sbjct 12555 TTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATG 12614 Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 | ||| || ||||| || || || |||||||| ||||| || || ||| || | | Sbjct 12615 AGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTGGCTTTAACATTCT-C 12673 Query 134646 AATGTGTCGGACGA--TTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 ||||| | || | ||| || ||||| |||||||||||||| || | |||||||| | Sbjct 12674 AATGT-TATCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAA 12732 Query 134704 AAATTTGCAT 134713 | |||||||| Sbjct 12733 AGATTTGCAT 12742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| ||||| ||||| | ||| || ||||| || || || |||||||| ||||| ||| Sbjct 13053 TGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATT 13112 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGA--TTCCACGTCGAGAGTAATGGTTTTAC 134685 || || || || | |||| || | ||| || ||||| ||||||||||||| Sbjct 13113 TTAGCCTTTACATTTTCGATGTTGTC--ACTACCTTCAACTTCGAGTGTAATGGTTTTAC 13170 Query 134686 CGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | |||||||| ||||||||||| Sbjct 13171 CAGTGAGGGTTTTAACAAAAATTTGCAT 13198 >seq1199 Length=11192 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||||||||| | || || || | || || |||||||| ||||| || ||||| || Sbjct 720 TTTCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCT 779 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | || || || || | ||||| ||||||||||| || | || ||||| || Sbjct 780 GATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGATCTGGT 839 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTC 134662 || || |||||||| ||||| ||||| ||||| | | ||||| | || || ||| Sbjct 840 GGGATACCTTCTTTATCTTGGATTTTGGCTTTGA-CATTTTCAATGTTATCTGAACCTTC 898 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || ||||||||||| || | |||||| || || |||||||| Sbjct 899 GACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 Score = 107 bits (118), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || || || | || || |||||||| ||||| || ||||| || Sbjct 1179 CCACCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 1238 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | ||||| || || ||||| | ||| || || || || || Sbjct 1239 AAAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGG 1298 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTG-TCGGACGATTCCAC 134665 || |||||||| ||||||||||| ||| || || ||||| || || ||| || Sbjct 1299 ATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTC-AATGTTATCTGAACCTTCAAC 1357 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 || | || ||||||||||| ||||| |||||||| ||||||||||| |||||| Sbjct 1358 TTCCAATGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATAATGTTTT 1413 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || | || | ||| || |||||||| ||||| |||||||| || | Sbjct 951 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 1010 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | ||||| || || ||||| | ||| || || || || || Sbjct 1011 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGA 1070 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCAC 134665 || |||||||| ||||||| |||| | || | | | ||||| | || || ||| || Sbjct 1071 ATACCTTCTTTATCTTGAA-TTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGAC 1129 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||||||||| || | ||||||||| || |||||||| Sbjct 1130 TTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 >seq102 Length=41085 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || | || | ||| || |||||||| ||||| |||||||| || Sbjct 615 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 556 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | ||||| || || ||||| || | || ||||| || || Sbjct 555 AGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 496 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||| || ||||| || | | || || ||| || Sbjct 495 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACT 436 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||||||||| || | ||||||||| || |||||||| Sbjct 435 TCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387205425440