Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq1 132 5e-26 >seq1 Length=107950 Score = 132 bits (146), Expect = 5e-26 Identities = 221/309 (72%), Gaps = 13/309 (4%) Strand=Plus/Plus Query 143041 AAGCATCATACAGTTCACCGCCAGAAACATCTGGACTGAACAGAGTTATGTATTCATCTT 143100 |||||||||| || | ||| | | ||| || |||||||| || || |||| || | Sbjct 66080 AAGCATCATAGAG--CCCCGGTACAT-CATGCGGGCTGAACAGCGTAAT--ATTC-TCGT 66133 Query 143101 TGC---CAAGACGTTCCAT-CATCAGGTCGTTGATTTGAAGACCATAGTCCAGGTGACGA 143156 ||| | || || | || ||||||| |||||| | ||||||||||| |||||| Sbjct 66134 TGCGTACCAGGCGG-CGATACATCAGGCGGTTGATCATTACGCCATAGTCCAGATGACGA 66192 Query 143157 ATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGTACGAGGAGATTCTCGACTTCAAGA 143216 | ||||| || || | ||| ||| ||||| | ||| || ||| | || ||||| ||| Sbjct 66193 ACACGGTTCTCCTCGATGCCGCGGTTATTCTTCAATACCAGCAGACTTTCAACTTCCAGA 66252 Query 143217 TGCCAAATTGGATAGTACAATGTTGCGGCACCACCACGAACTCCGCCTTGGGAACAGGAT 143276 |||||||| || ||| | || || || ||||| ||||| || || || || || ||| Sbjct 66253 TGCCAAATAGGGTAGAAAGCCGTCGCTGCGCCACCTCGAACGCCACCCTGCGAGCATGAT 66312 Query 143277 TTAACTGCAGTTTGGAAGTGTTTCCAGAAA-GGAATAACTCCAGTATGCTTGACTTCACC 143335 || || || || ||||||||||| |||||| || || || ||||| || || |||| || Sbjct 66313 TTCACAGCGGTCTGGAAGTGTTT-CAGAAAGGGGATTACGCCAGTGTGGGTGGCTTCTCC 66371 Query 143336 GTTTCCGAT 143344 || | ||| Sbjct 66372 ATTGCGGAT 66380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544951129065120